Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b07f
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 186 3e-48
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 81 1e-16
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 29 0.46
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 29 0.46
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 28 1.1
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 28 1.4
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 28 1.4
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 27 1.8
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 2.4
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 27 2.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.4
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 26 4.3
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 26 4.3
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.9
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ... 25 9.9
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 25 9.9
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 186 bits (452), Expect = 3e-48
Identities = 91/186 (48%), Positives = 130/186 (69%), Gaps = 5/186 (2%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYD-YVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 249
V+FVLG PG+GKGTQC +++++D +VH+SAGD LREE+ RPGS+YG +I+E I++G+IV
Sbjct: 4 VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63
Query: 250 PVEVTCSLLHKAMQK---SGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSRE 420
P+E+T SLL M++ G ++FLIDGFPR D +G+E+ + F L+F C +E
Sbjct: 64 PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAK---FALYFRCGQE 120
Query: 421 ICTERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQV 600
+R + RG SGRSDDN+ES+KKRF TY +MP++ Y + I+AE++PD V
Sbjct: 121 TMLKRLIHRGKT-SGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAV 179
Query: 601 F-DKVK 615
F D VK
Sbjct: 180 FEDTVK 185
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 81.4 bits (192), Expect = 1e-16
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 29/208 (13%)
Frame = +1
Query: 76 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVPV 255
+ ++G PG+GKGTQ I K+Y HL+ GD+LR + R +E G+ ++ + G +V
Sbjct: 6 LILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQ-TELGKEAKKIMDQGGLVSD 64
Query: 256 EVTCSLLHKAMQKSG--KERFLIDGFPRNQDNMDGWERVMSD-KTKLLFVLFFECSREIC 426
++ ++ + + K F++DGFPR + ++ + K L VL + E+
Sbjct: 65 DIVTGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELL 124
Query: 427 TERCLRRGA-AGSG-------------------------RSDDNVESLKKRFNTYLNDTM 528
R R GSG RSDDN ++L+KR TY T
Sbjct: 125 VRRITGRLVHPGSGRSYHLEFNPPKVPMKDDVTGEPLIQRSDDNADALRKRLVTYHEQTT 184
Query: 529 PIINYYDKLGLVRRINAEEEPDQVFDKV 612
P++ +Y K G ++A ++P+QV++++
Sbjct: 185 PVVEFYKKKGKWAAVDAAQKPEQVWEQI 212
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 29.5 bits (63), Expect = 0.46
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 67 PQVVFVLGAPGSGKGTQCSMISKEY 141
P V+ ++G GSGK T CS ++ Y
Sbjct: 101 PSVIMMVGLQGSGKTTTCSKLALHY 125
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 29.5 bits (63), Expect = 0.46
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 9/151 (5%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYDYV-----HLSAGDLLREERQRPGSEYGEMI----EE 225
++ ++G P +GK S +S+ Y+++ S GD REE S + EE
Sbjct: 145 IIILVGIPATGKSYIGSKLSRYYNWLKYNCRFFSVGDKRREEGASTYSMSADFFDIKNEE 204
Query: 226 KIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFF 405
+ E V +E LLH + ++G L ++ ++R+ + + L
Sbjct: 205 TFKFRENVALETLEDLLHWMIHENGVIGILDATNSTHERRKHLYDRISKEADIGIMFLES 264
Query: 406 ECSREICTERCLRRGAAGSGRSDDNVESLKK 498
C+ +I E ++ G + ES K
Sbjct: 265 LCTDDILFEENIKLKIKGPDYEGYDTESALK 295
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +1
Query: 76 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLRE 180
+ + G PG+GK T +++ + ++ GD+++E
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELENICIGDVVKE 45
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYD 144
++ + G PGSGK T C++++K ++
Sbjct: 31 LIGLAGGPGSGKSTLCAILAKAWN 54
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Frame = +1
Query: 166 DLLREERQRPGSEYGEM---IEEKIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRN 336
++LR++RQ+ SE ++ ++EK + P ++ + ++ + D F R
Sbjct: 100 EILRQQRQKRKSELTQLSQKVKEKFKKMRKKPARRIVTIANDE-EEEDDQTMDEDAFERK 158
Query: 337 QDNMDGWERVMSDKTKLLFVLFFECSREI 423
+ ER ++DKT L F E S ++
Sbjct: 159 SMQGELKERNLTDKTSTLSTSFGETSPDV 187
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 55 NKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDL 171
N+ V V+G GSGK T +S++ + ++ DL
Sbjct: 10 NQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 493 KKRFNTYLNDTMPIINYYDKLGLVRRI-NAEEEPDQVFDKVKVAFD 627
K++FNTYL + + + NY + L+ R+ + PD V + D
Sbjct: 657 KRKFNTYLAEGVVLNNYANIFQLITRMRQMADHPDLVLASKRKTVD 702
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 133 KEYDYVHLSAGDLLREERQRPGSEYGEMI 219
KE DY SA + + ++ PGSE GE++
Sbjct: 56 KEIDYAVKSAKEAFKTWKKVPGSEKGELL 84
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 67 PQVVFVLGAPGSGKGTQCSMISKEYDYVHLS 159
P +V V+G PG+GK T + + Y +S
Sbjct: 74 PVIVAVMGPPGTGKSTLIKSLVRRYSKYTIS 104
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -3
Query: 496 SLSSLRCRRFVHCLQRRVSSISRYIFHANIRRTKR 392
++ + + F+HCL +S RY++ A R T +
Sbjct: 311 NIGDIFSKNFLHCLINHLSDEDRYLYRAAKRVTSK 345
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 2386
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 13 LMLNSVLRQSSRYINKMVPQVVFVLGAPG 99
L+LN +L +S +NK++ + V+ PG
Sbjct: 1280 LVLNVILTESELEVNKVIEEFQLVINQPG 1308
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 64 VPQVVFVLGAPGSGKGTQC 120
+P V+G PGSGK T C
Sbjct: 1 MPFCQVVVGPPGSGKSTYC 19
>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 226
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -2
Query: 140 YSLEIIEHCVPLPEPGA 90
Y+++++EH PLP+P A
Sbjct: 189 YTVQLVEHGDPLPQPQA 205
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 196 GSEYGEMIEEKIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMD 351
GS+ EE+ +GE+V EV ++L ++ K+ L D + D ++
Sbjct: 97 GSDESSSEEEEDSDGELVTPEVDAAILRMIVKIRNKDPDLYDSQQKYFDEVE 148
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,751,846
Number of Sequences: 5004
Number of extensions: 58841
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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