Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b07f
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259... 175 2e-44
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 167 7e-42
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 164 5e-41
04_01_0026 - 354855-354876,355184-355248,355710-355817,356215-35... 161 3e-40
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56... 112 2e-38
11_03_0227 + 11934530-11934638,11937206-11937351,11937492-119376... 86 3e-17
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 82 4e-16
12_01_0813 + 7475591-7475693,7476972-7477117,7477205-7477324,747... 80 1e-15
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 79 2e-15
04_04_1543 - 34270578-34270718,34271069-34271341,34271782-342719... 70 1e-12
03_01_0215 + 1696250-1696573,1697653-1697793,1698267-1698539,169... 69 4e-12
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 50 2e-06
07_03_0057 + 12872946-12873152,12873371-12873421,12876335-128764... 44 1e-04
03_01_0279 - 2141327-2141437,2141667-2141789,2141869-2142057,214... 29 4.4
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 29 4.4
06_01_0598 + 4324129-4326150 28 5.9
03_05_0880 - 28450248-28450458,28451911-28452013,28452135-284522... 28 7.7
01_05_0703 - 24404580-24406373 28 7.7
>07_03_1324 -
25825153-25825197,25825705-25825785,25825907-25825967,
25826005-25826060,25826171-25826239,25826366-25826473,
25826555-25826635,25826795-25826951,25827060-25827177,
25827285-25827339,25827779-25827814
Length = 288
Score = 175 bits (427), Expect = 2e-44
Identities = 90/184 (48%), Positives = 121/184 (65%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 252
VVFVLG PGSGKGTQC+ I + + + HLSAGDLLR E + GSE G MIE I+ G+IVP
Sbjct: 26 VVFVLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEI-KSGSENGTMIENMIKEGKIVP 84
Query: 253 VEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICTE 432
EVT LL AM K+ ++FLIDGFPRN++N +E V K FVLFF+CS E
Sbjct: 85 SEVTIKLLQDAMIKNENDKFLIDGFPRNEENRAAFENV--TKISPAFVLFFDCSEEEMER 142
Query: 433 RCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKV 612
R L R GR DDN+E+++KRF ++ ++P+I +Y+ V++I+A + +VF+ V
Sbjct: 143 RLLGR---NQGRVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDV 199
Query: 613 KVAF 624
K F
Sbjct: 200 KAIF 203
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 167 bits (406), Expect = 7e-42
Identities = 89/184 (48%), Positives = 120/184 (65%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 252
VVFVLG PGSGKGTQC+ I + + ++HLSAGDLLR E + GSE G MIE I+ G+IVP
Sbjct: 29 VVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAE-IKSGSENGTMIENMIKEGKIVP 87
Query: 253 VEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICTE 432
E +AM KSG ++FLIDGFPRN++N +E V K FVLFF+CS E
Sbjct: 88 SE-------EAMIKSGNDKFLIDGFPRNEENRAAFENV--TKITPAFVLFFDCSEEEMER 138
Query: 433 RCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKV 612
R L R GR DDN+E+++KRF ++ ++P+I YY+ V++I+A + +VF+ V
Sbjct: 139 RLLGR---NQGRVDDNIETIRKRFKVFVESSLPVIEYYNAKDKVKKIDAAKPIPEVFEDV 195
Query: 613 KVAF 624
K F
Sbjct: 196 KAIF 199
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 164 bits (399), Expect = 5e-41
Identities = 79/167 (47%), Positives = 115/167 (68%)
Frame = +1
Query: 70 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 249
+++FVLG PGSGKGTQCS I + + ++HLSAG+LLR E GSE G MI+ I G+IV
Sbjct: 24 KIIFVLGGPGSGKGTQCSNIVEHFGFIHLSAGELLRAEINS-GSENGTMIDTIITEGKIV 82
Query: 250 PVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICT 429
P E+T LL +A+ K G ++++IDGFPRN++N +E V+S + FVLFF+CS E
Sbjct: 83 PSEITIKLLQEAIIKGGNDKYIIDGFPRNEENRVVFESVISISPE--FVLFFDCSEEEME 140
Query: 430 ERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRR 570
R L R GRSDDN+E+++KR ++ ++P+I YY+ G+V++
Sbjct: 141 RRLLGR---NQGRSDDNIETIRKRLKVFVESSLPVIEYYESKGMVKK 184
>04_01_0026 -
354855-354876,355184-355248,355710-355817,356215-356295,
356729-356885,356990-357107,357485-357533,357806-357901
Length = 231
Score = 161 bits (392), Expect = 3e-40
Identities = 81/190 (42%), Positives = 117/190 (61%)
Frame = +1
Query: 67 PQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEI 246
P + FVLG PGSGKGTQC I+ ++ + HLSAGDLLR E G E GE+I I+ G+I
Sbjct: 42 PFIAFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEIST-GGEKGELILNIIKEGKI 100
Query: 247 VPVEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREIC 426
VP E+T L+ KAM+ S +R LIDGFPR ++N +ER+ + L V+FF+C +
Sbjct: 101 VPSEITVELIRKAMESSDAKRVLIDGFPRCEENRIAFERITGTEPDL--VIFFDCPEDEM 158
Query: 427 TERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFD 606
+R L R GR DDN+E++KKR + + +P+++YY G V +INA +++F
Sbjct: 159 VKRLLGR---NQGRVDDNIETIKKRLKVFESLNIPVVDYYTSRGKVHKINATGTEEEIFG 215
Query: 607 KVKVAFDEIN 636
V F ++
Sbjct: 216 AVHKLFSSLS 225
>06_01_0067 +
561910-561987,562698-562759,564293-564338,564701-564758,
564892-565009,565130-565286,565611-565718,565884-565955,
566058-566174,566309-566404
Length = 303
Score = 112 bits (269), Expect(2) = 2e-38
Identities = 50/101 (49%), Positives = 73/101 (72%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 252
+VFV+G PGSGKGTQC+ I K++ + HLSAGDLLREE + +E G MI+ + G++V
Sbjct: 77 IVFVIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREE-AKYDTEQGTMIKNLMNEGKLVS 135
Query: 253 VEVTCSLLHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSD 375
++ LL KAM++SG ++FL+DGFPRN++N +E + D
Sbjct: 136 SDLIVKLLFKAMRESGNDKFLVDGFPRNEENRHAYENIGRD 176
Score = 64.9 bits (151), Expect(2) = 2e-38
Identities = 22/58 (37%), Positives = 42/58 (72%)
Frame = +1
Query: 463 GRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVKVAFDEIN 636
GR DDN++++++RF+ + T+P+I YY+K G +R+++ + D+VF+ VK F ++N
Sbjct: 174 GRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKAIFAQLN 231
>11_03_0227 +
11934530-11934638,11937206-11937351,11937492-11937611,
11937731-11937898,11938534-11938623,11938920-11939018
Length = 243
Score = 85.8 bits (203), Expect = 3e-17
Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 28/228 (12%)
Frame = +1
Query: 16 MLNSVLRQSSRYINKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRP 195
++N +LR+ + +K +++ V G PGSGKGTQ +I EY HL+ GD+LR
Sbjct: 15 LMNELLRRM-KCSSKPDKRLILV-GPPGSGKGTQSPIIKDEYCLCHLATGDMLR-AAVAA 71
Query: 196 GSEYGEMIEEKIRNGEIVPVEVTCSLLHKAMQK-SGKERFLIDGFPRNQDNMDGWERVMS 372
+ G +E + GE+V ++ ++ +AM+K S ++ F++DGFPR + ++
Sbjct: 72 KTPLGVKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLE 131
Query: 373 DK-TKLLFVLFFECSREICTERCLRRGA-AGSGRS------------------------- 471
K TK+ VL F I ER R SGRS
Sbjct: 132 KKGTKVDKVLNFAIDDSILEERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRK 191
Query: 472 DDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVK 615
DD E LK R + T P+I+YY K LV ++AE+ P +V +V+
Sbjct: 192 DDTAEVLKSRLEAFHKQTEPVIDYYSKKALVANLHAEKPPKEVTAEVQ 239
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 81.8 bits (193), Expect = 4e-16
Identities = 41/95 (43%), Positives = 62/95 (65%), Gaps = 2/95 (2%)
Frame = +1
Query: 58 KMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRN 237
K P V + GAP SGKGTQC +I +Y VH+SAGDLLR E GSE G+ +E +
Sbjct: 70 KADPLKVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAE-IAAGSENGKRAKEFMEK 128
Query: 238 GEIVPVEVTCSLL-HKAMQKSGKER-FLIDGFPRN 336
G++VP E+ +++ + +Q +E+ +L+DG+PR+
Sbjct: 129 GQLVPDEIVVNMVKERLLQPDAQEKGWLLDGYPRS 163
>12_01_0813 +
7475591-7475693,7476972-7477117,7477205-7477324,
7477445-7477612,7478252-7478341,7478941-7479039
Length = 241
Score = 80.2 bits (189), Expect = 1e-15
Identities = 63/210 (30%), Positives = 100/210 (47%), Gaps = 28/210 (13%)
Frame = +1
Query: 76 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVPV 255
V ++G PG GKGTQ +I E+ HL+ GD+LR + G +E + GE+V
Sbjct: 31 VILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLR-AAVAAKTPLGIKAKEAMDKGELVSD 89
Query: 256 EVTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDK-TKLLFVLFFECSREICT 429
++ ++ +AM+K+ ++ F++DGFPR + +++ + TK+ VL F I
Sbjct: 90 DLVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
Query: 430 ERCLRRGA-AGSGRS-------------------------DDNVESLKKRFNTYLNDTMP 531
ER R SGRS DD LK R + T P
Sbjct: 150 ERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKP 209
Query: 532 IINYYDKLGLVRRINAEEEPDQVFDKVKVA 621
+I+YY K G+V ++AE+ P +V +V+ A
Sbjct: 210 VIDYYTKKGIVANLHAEKPPKEVTVEVQKA 239
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 79.4 bits (187), Expect = 2e-15
Identities = 48/119 (40%), Positives = 68/119 (57%), Gaps = 2/119 (1%)
Frame = +1
Query: 58 KMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRN 237
K P V + GAP SGKGTQC MI ++Y VH+S GDLLR E G+E G+ +E + N
Sbjct: 86 KEAPLKVMISGAPASGKGTQCRMIVEKYGLVHISTGDLLRAE-VSSGTEIGKKAKEYMDN 144
Query: 238 GEIVPVE-VTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFE 408
G +VP + VT ++ + Q +ER +L+DG+PR+ E M + + VL E
Sbjct: 145 GMLVPDQVVTDMVVSRLSQPDVRERGWLLDGYPRSYAQAQSLES-MKIRPDIFIVLEIE 202
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 466 RSDDNVESLKKRFNTYLNDTMPIINYYDKL 555
RSDD E +K R +TY ++ +I Y L
Sbjct: 267 RSDDTFEKVKSRLDTYKQNSEAVIPTYSDL 296
>04_04_1543 -
34270578-34270718,34271069-34271341,34271782-34271922,
34272365-34272667
Length = 285
Score = 70.1 bits (164), Expect = 1e-12
Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 3/144 (2%)
Frame = +1
Query: 70 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 249
Q VF LG PG GKGT S +S+ H++ GDL+R+ PG + E + E + NG++V
Sbjct: 55 QWVF-LGCPGVGKGTYASRLSQMLRVPHIATGDLVRDALASPG-PFSEQLAEIVNNGKLV 112
Query: 250 PVEVTCSLLHKAMQ---KSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSRE 420
E+ +LL K ++ + G+ F++DGFPR + ++ T + V+ + E
Sbjct: 113 SDEIIINLLSKRLEEGAEKGELGFILDGFPRTIRQAE----ILEGVTDIDLVINLKLREE 168
Query: 421 ICTERCLRRGAAGSGRSDDNVESL 492
+CL R + NV S+
Sbjct: 169 ALLAKCLGRRMCSQCGGNFNVASI 192
>03_01_0215 +
1696250-1696573,1697653-1697793,1698267-1698539,
1698755-1698814,1698890-1699033
Length = 313
Score = 68.5 bits (160), Expect = 4e-12
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Frame = +1
Query: 34 RQSSRYINKMVPQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGE 213
R R + Q VF LG PG GKGT S +S+ H++ GDL+R+E G
Sbjct: 50 RARQRVAEERNVQWVF-LGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSG-PLSV 107
Query: 214 MIEEKIRNGEIVPVEVTCSLLHKAMQK---SGKERFLIDGFPRNQDNMDGWERVMSDKTK 384
+ E + G++V E+ +LL K ++K G+ F++DGFPR + ++ T
Sbjct: 108 QLAEIVNQGKLVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAE----ILDGVTD 163
Query: 385 LLFVLFFECSREICTERCLRRGAAG 459
+ V+ + ++ E+CL R G
Sbjct: 164 IDMVVNLKLREDVLVEKCLGRRICG 188
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 49.6 bits (113), Expect = 2e-06
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Frame = +1
Query: 67 PQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEI 246
PQ V V+G PG K + +++ ++S G L+R+E P S + I + G++
Sbjct: 71 PQWV-VMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELS-PASSLYKKIANSVNEGKL 128
Query: 247 VPVEVTCSLLHKAMQK---SGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECS 414
VP ++ LL K +++ G+ F++DG PR + ++ + + VL F+C+
Sbjct: 129 VPEDIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAE----ILDEIVDIDLVLNFKCA 183
>07_03_0057 +
12872946-12873152,12873371-12873421,12876335-12876480,
12876567-12876756
Length = 197
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 76 VFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEI 246
V V G PG+GK T CS+++ D H++ GDL+RE+ G + E +E I N ++
Sbjct: 15 VLVTGTPGTGKTTTCSLLADAVDLRHINIGDLVREKSLHDG--WDEELECHIINEDL 69
>03_01_0279 -
2141327-2141437,2141667-2141789,2141869-2142057,
2142270-2142989,2144857-2144931
Length = 405
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 454 QRRVSSISRYIFHANIRRTKRKVAWFCRT*RAPSHP 347
++R ISRYI N R +K+ + CR A S P
Sbjct: 305 EQRKEKISRYIKKRNERNFSKKIKYACRKTLADSRP 340
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -3
Query: 376 CRT*RAPSHPYYLDYAESHL*GNVLYRISAWPCVIRSK*PPLELSHRYESFLQSFLRILN 197
C T PS PYY+D +++ V Y+++ P R+ + H Y S + S++ L+
Sbjct: 262 CGTHPTPSKPYYVDKIDTNEQKVVHYQVNCRPARDRNT-GSYSVKHHYPSPIVSWIEDLS 320
Query: 196 QVSGV 182
V
Sbjct: 321 SFGNV 325
>06_01_0598 + 4324129-4326150
Length = 673
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 205 YGEMIEEKIRNGEIVPVEVTCSLLHKAMQKSGKERF 312
+ EM++E I E+V + + H M +GKE F
Sbjct: 514 FNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYF 549
>03_05_0880 -
28450248-28450458,28451911-28452013,28452135-28452280,
28452629-28452801,28453267-28453539
Length = 301
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 487 SLKKRFNTYLNDTMPIINYYDKLGLVRRINAE 582
S++K Y++ + PII+Y D L L R I+ +
Sbjct: 200 SVQKEMRRYIDASSPIIDYIDNLFLSRSISLD 231
>01_05_0703 - 24404580-24406373
Length = 597
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 70 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 249
+VV ++G G+GK T S+++ D + AG++L R + + + ++ +
Sbjct: 63 EVVAIVGPSGAGKTTLLSVLAGSADPARVVAGEVLVNGRAMDAARFRRVSGHVPQDDALF 122
Query: 250 P-VEVTCSLLHKA 285
P + V SL++ A
Sbjct: 123 PMLTVEESLVYSA 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,359,707
Number of Sequences: 37544
Number of extensions: 367651
Number of successful extensions: 1105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -