Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b07f
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42) 128 5e-30
SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30) 104 6e-23
SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.) 89 3e-18
SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 8e-12
SB_19245| Best HMM Match : ADK (HMM E-Value=0) 67 1e-11
SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31) 56 2e-08
SB_4186| Best HMM Match : ADK (HMM E-Value=0.094) 31 0.64
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_44271| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016) 28 6.0
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52) 28 6.0
SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6) 28 6.0
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
Length = 1644
Score = 128 bits (308), Expect = 5e-30
Identities = 58/106 (54%), Positives = 77/106 (72%)
Frame = +1
Query: 283 AMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICTERCLRRGAAGS 462
AM KS ++FLIDGFPRN+DN+ GWE M+DK + VLFFEC +IC R + RG + S
Sbjct: 1 AMAKSDVQKFLIDGFPRNEDNLQGWESRMNDKVDVKAVLFFECPEDICIGRIMSRGQS-S 59
Query: 463 GRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQV 600
GR DDN+ESL+KRF+T+ N TMPII +Y + GLV+ I+ PD++
Sbjct: 60 GRPDDNIESLRKRFHTHENSTMPIIEHYRRQGLVKPISGAPTPDEI 105
>SB_33375| Best HMM Match : ADK (HMM E-Value=1.6e-30)
Length = 297
Score = 104 bits (250), Expect = 6e-23
Identities = 61/149 (40%), Positives = 90/149 (60%), Gaps = 3/149 (2%)
Frame = +1
Query: 70 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 249
++V++LG PG+GKGT C + K+Y+Y HLSAGDLLREE R G+E G+MI E +R G++V
Sbjct: 117 RIVYILGGPGAGKGTICDSVVKKYNYCHLSAGDLLREEVTR-GNERGQMITEMMREGKLV 175
Query: 250 PVEVTCSLLHKAMQK-SGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREIC 426
P E+T LL AM++ FLIDGFPR+ D +E + K L F + E+
Sbjct: 176 PKEITIGLLQDAMREHKDMPGFLIDGFPRDIDQGITFEEQHILRKKAL--NFLSSTAELP 233
Query: 427 TERC--LRRGAAGSGRSDDNVESLKKRFN 507
+C +G +G+ + + + +RFN
Sbjct: 234 PLKCQIWSKGGPATGKK-THCKHVAERFN 261
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 88 GAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 252
G P +GK T C +++ ++Y H+ G L+ +E Q+ ++I + I G VP
Sbjct: 243 GGPATGKKTHCKHVAERFNYTHIMPGTLVAQEAQKDTDRAKQLI-QTISAGNDVP 296
>SB_13785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 89.0 bits (211), Expect = 3e-18
Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Frame = +1
Query: 259 VTCSLLHKAMQKSGKER-FLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREICTER 435
+ LL AM K FLIDGFPR + +E+ ++ +LL L+FECS + R
Sbjct: 2 IILELLRLAMVKQPNTTGFLIDGFPRELEQGLEFEKELA-LCELL--LYFECSPDTMKAR 58
Query: 436 CLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVK 615
L+RG SGR DDN E++ R T++ TMP+I +Y + G V++I+AE PD+VF KV
Sbjct: 59 LLKRGET-SGRVDDNEETILSRLETFITQTMPVIEHYQEEGKVKKISAEGGPDEVFKKVS 117
Query: 616 VAFDEIN*NESN 651
+E+ N SN
Sbjct: 118 RVLEELP-NRSN 128
Score = 69.7 bits (163), Expect = 2e-12
Identities = 55/201 (27%), Positives = 98/201 (48%), Gaps = 14/201 (6%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIVP 252
++F++G PGSGK +++ HLS G LL+EE + ++ G + + I G +V
Sbjct: 136 IMFIVGGPGSGKAELAKRLAESSGRTHLSMGQLLKEEATK-DTDRGREVAQAIAMGTLVS 194
Query: 253 VEVTCSLLHKAMQKSGK--ERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREIC 426
E ++L + + K E +++DGFPR+ + + +SD + V+ ECS E
Sbjct: 195 PEHALNILTEKIVSDEKNLEGYVVDGFPRSHEQAKNFTEKVSDFNR---VVALECSDEE- 250
Query: 427 TERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIIN------------YYDKLGLVRR 570
ER L + G+ N E LK R Y ++T+ +++ Y +V +
Sbjct: 251 MER-LAKEKLGAAL---NEEQLKTRIEVYRDNTIAMLDDIEGGKITKSSPYLPNNLVVIQ 306
Query: 571 INAEEEPDQVFDKVKVAFDEI 633
I+AE PD+ F ++ F+ +
Sbjct: 307 ISAEGGPDEAFKEISRVFEGV 327
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 73 VVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREE 183
+VF++G PGSGK ++++ H+S G LL+EE
Sbjct: 340 IVFIVGGPGSGKTELAKLLAESSGRTHISMGQLLKEE 376
>SB_58530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 67.7 bits (158), Expect = 8e-12
Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
Frame = +1
Query: 70 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEIV 249
+V+FV+G PGSGK ++++ H+S G LL+EE + ++ + I G +V
Sbjct: 105 RVIFVIGGPGSGKTELAKLLAESSGRTHISMGQLLKEEATK-DTDRAREVARAIGMGTLV 163
Query: 250 PVEVTCSLLHKAMQKSGKE--RFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREI 423
E +L + + + K +++DG+PR+ + + +SD + V+ ECS E
Sbjct: 164 SPEHALGILSETIVRGEKNLGGYVVDGYPRSHEQAKNFTEKVSDFNR---VVALECSDEE 220
Query: 424 CTERCLRRGAAGSGRSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVF 603
ER L + G+ N E LK R Y ++T+ +++ ++ +I A + ++VF
Sbjct: 221 -MER-LAKEKLGAAL---NEEQLKTRIEVYRDNTIAMLDDMEE-AKTTKIPAAQTIEEVF 274
Query: 604 DKVK 615
++ K
Sbjct: 275 EQTK 278
>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
Length = 188
Score = 67.3 bits (157), Expect = 1e-11
Identities = 48/136 (35%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Frame = +1
Query: 67 PQVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLLREERQRPGSEYGEMIEEKIRNGEI 246
P ++G PGSGKGT I +++ HLS+G+LLR Q ++ GE + I GE+
Sbjct: 31 PVRAIIMGPPGSGKGTVSERIVRDFGVEHLSSGELLRHHVQN-HTDLGEEAQAYILKGEL 89
Query: 247 VPVEVTCSL-LHKAMQKSGKERFLIDGFPRNQDNMDGWERVMSDKTKLLFVLFFECSREI 423
VP E+ L LH+ K G +L+DGFPR G +S+K K+ V+ +
Sbjct: 90 VPDELMVDLILHELDAKKG--NWLLDGFPRTV----GQAETLSEKHKIDVVVNMDVPFAT 143
Query: 424 CTERCLRRGA-AGSGR 468
+R +R A SGR
Sbjct: 144 IVDRIKQRWVHAVSGR 159
>SB_31065| Best HMM Match : ADK (HMM E-Value=1.5e-31)
Length = 166
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +1
Query: 466 RSDDNVESLKKRFNTYLNDTMPIINYYDKLGLVRRINAEEEPDQVFDKVKVAFDE 630
RSDDN +L KR Y + T P+I+YY K G+ +I+A + PD V+ V AFD+
Sbjct: 103 RSDDNEATLTKRLQAYHSQTTPLIDYYTKRGIHHKIDASKPPDTVYSSVLKAFDD 157
>SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)
Length = 1053
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 70 QVVFVLGAPGSGKGTQCSMISKEYDYVHLSAGDLL 174
+VV + G PGS KG+ + + K + +V +SA DL+
Sbjct: 662 RVVIMFGGPGSTKGSIINDLVKMFGFVFISAEDLI 696
>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3160
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 190 RPGSEYGEMIEEKIRNGEIVPVEVTCSLLHKAMQKSGKERFLIDGFPRN 336
RP ++ +I E V + + C+L+ + K G FLI FP N
Sbjct: 293 RPRFDFTADYLVRIYRAECVNLRLHCNLIKGVLDKQGYSAFLIASFPNN 341
>SB_44271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = -2
Query: 524 VSFRYVLNLFFKLSTLSSLRPLPAAPRLKHLSVHISREHSKNKTKSSLVLSDMTRSQPS 348
V FR+ +++ F T+ PA+ + K ++VHI + ++ + D+TR++ S
Sbjct: 11 VHFRFPIDVLFVDKTIKHKLDNPAS-KFKQVTVHIKKRTKPQESDQKKTMQDLTRARIS 68
>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -3
Query: 214 FLRILNQVSGVLLGVNRLHSNGHNHIL*KSLSTVYLCQSQELPTR 80
F+R ++ G +G+ R ++G + SL + LC+SQ LPTR
Sbjct: 28 FVRTISASGGSWIGLKR-ENDGFRWVADNSLISRSLCRSQILPTR 71
>SB_42730| Best HMM Match : Ank (HMM E-Value=0.00016)
Length = 999
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 529 PIINYYDKLGLVRRINAEEEPD 594
P+ Y+ KLGLVR + EE D
Sbjct: 820 PMFEYFQKLGLVRVVQISEESD 841
>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
Length = 1183
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 529 PIINYYDKLGLVRRINAEEEPD 594
P+ Y+ KLGLVR + EE D
Sbjct: 16 PMFEYFQKLGLVRVVQISEESD 37
>SB_17427| Best HMM Match : ResIII (HMM E-Value=0.6)
Length = 486
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +1
Query: 19 LNSVLRQSSRYINKMVPQVVFVLGAPGSGKGTQCSMISKE 138
+ +V + +++ K P +++ GAPG+GK +M+ ++
Sbjct: 219 IKAVTKFLEKHVQKKKPGSLYISGAPGTGKTACLTMVIRD 258
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 570 PADKT*FIVIVDDRHCIIQICVESFL 493
P DK +V VD H +Q+C+ +FL
Sbjct: 248 PTDKPRNVVFVDIGHSSLQVCITAFL 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,399,746
Number of Sequences: 59808
Number of extensions: 450643
Number of successful extensions: 1142
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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