Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b05f
         (637 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    24   0.92 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    23   2.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.8  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   4.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   6.5  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.6  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
 Frame = +2

Query: 338 DQEA-LLSPRPARVRDRDINKDEPTCDQLKAMWRFSKRQARAPEIMNEVSSYRDPLMYNE 514
           D+EA +L  R    + + I+ DE    Q K      K + +AP+   ++   R      E
Sbjct: 51  DEEAPVLKSRSFGRKRKSISSDEENSFQGK-----HKSRRKAPQSFEDIQHQRVMANVRE 105

Query: 515 WPVYTAVPRAAPRFRYQYPTMPREAYGRVVT 607
                ++  A    R   PTMP +   ++ T
Sbjct: 106 RQRTQSLNEAFASLRKSIPTMPSDKLSKIQT 136


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 299 LAMCACAVMAQRIDQE 346
           LA+CAC V AQ+  +E
Sbjct: 11  LAICACTVFAQQQAEE 26



 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 527 CRQAIHCTSTGL 492
           CR  I CTS+GL
Sbjct: 59  CRDVIQCTSSGL 70


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +2

Query: 266 DNRMFLWRAWTLAMCACAVMAQRIDQEALLSPRPARVRDRDINKDEPTCDQLKAMWRFSK 445
           +++  LW AW      C   + R       SPR  RV+     +  PT ++ +    FS 
Sbjct: 184 ESQPMLWPAWVY----CTRYSDRPSSGR--SPRTRRVKKPGAKQGAPTAEEKRPRTAFSG 237

Query: 446 RQ 451
            Q
Sbjct: 238 AQ 239


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 619 GGSFRNNSAVSFARHR 572
           GGS  N  A+S AR+R
Sbjct: 198 GGSIANGYAISCARYR 213


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 109 SGMHFWGTFSSKQKS 153
           SG HFW + S  Q+S
Sbjct: 172 SGTHFWHSHSGFQRS 186


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +2

Query: 536 PRAAPRFRYQYPTMPREAYG 595
           P   P F  QY   P E YG
Sbjct: 434 PPGDPAFHNQYAHYPAEYYG 453


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 527 CRQAIHCTSTGL 492
           CR  + CT +GL
Sbjct: 51  CRDVVRCTKSGL 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,684
Number of Sequences: 336
Number of extensions: 3632
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)