Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b05f
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    34   0.015
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    30   0.24 
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   0.98 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    27   1.7  
SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomy...    27   3.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   4.0  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.2  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   6.9  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   6.9  
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ...    25   9.1  
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch...    25   9.1  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 34.3 bits (75), Expect = 0.015
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +2

Query: 374 VRDRDINKDEPTCDQLKAMWRFSKRQARAPEIMNEVSSY---RDPLMYNEWPVYTA 532
           +R R I+      ++    WR+ +  + + E++NE S++    DPL Y +W ++ +
Sbjct: 79  IRKRGIDAGILELERQTPRWRYKRDASESDELLNEFSNHFGISDPLFYGQWHIFNS 134


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +1

Query: 406 YLRSAQGDVEILEATSPCSRDHERSELLQRPVDVQ*MACLHSCAQSRPKVPLPV-----P 570
           +LRS  G+   + +   C R   RS+ L +      M  +H     RP  P+P      P
Sbjct: 96  HLRSHTGEKPFICSVPECDRSFTRSDALAKH-----MRTVHEADTLRPSDPIPKAHPMHP 150

Query: 571 DDASRSLRQSCYESSPQRRSH 633
            + + ++ QS  E+  Q++ H
Sbjct: 151 QNVANAMVQSAREARAQQQMH 171


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 314 CAVMAQRIDQEALLSPRPA-RVRDRDINKDEPT 409
           C    Q IDQ+  L P P+ +  D  I+K EPT
Sbjct: 182 CLQFGQLIDQDPYLFPNPSYKKNDSSISKAEPT 214


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/53 (32%), Positives = 33/53 (62%)
 Frame = +1

Query: 61  QQTIYLIELNSFANLQSGMHFWGTFSSKQKS*NYIHVSGNRYFLLVNFFLRLI 219
           ++ I L +  SF ++  G+   GT+ +  +S +++H + N YFLL  FF+R++
Sbjct: 255 ERCICLEDSISFISVIMGIDL-GTWFASPESLSHLHDNLNSYFLL-KFFVRVL 305


>SPBC31F10.15c |atp15||F0-ATPase epsilon subunit|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 67

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +2

Query: 446 RQARAPEIMNEVSSYRD-PLMYNEW 517
           RQA  PEI NEV ++ D   +Y  W
Sbjct: 23  RQALKPEIKNEVKTHGDAEFLYTRW 47


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +2

Query: 497 PLMYNEWPVYTAVPRAAPRFRYQYPTMPREA 589
           PL Y  WP Y +VP AAP    Q   MP  A
Sbjct: 108 PLNYY-WPSYQSVPSAAPPPPSQQRYMPDSA 137


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 324 MTAHAHMAKVHARQRNILLSGNRARRPRNSITPLTN*TEKKIN 196
           + AH  +  +  R+R IL + N+ +   NS+       EK++N
Sbjct: 169 LPAHEKLIDLRKREREILQNKNQGQSTLNSLKDRQQALEKEVN 211


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 70  IYLIELNSFANLQ-SGMHFWGTFSSKQKS*NYIHVSG 177
           ++  E   F N + S  + W  +S + K  +Y H+SG
Sbjct: 488 VFSPEFGLFVNCEESSNYLWFNYSHRSKEIDYYHMSG 524


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = -1

Query: 520 RPFIVHQRVSVGAHFVHDLGSTGLSLRESPHRLELIASRFILVDVPVTNSGRPGRQQRFL 341
           RP +   R +      +DL +   S+ ++P+       R +L   PV++S  P + + F 
Sbjct: 164 RPLVRLLRNAAEFSRAYDLHNAHPSIHDAPYSSPFPPPRIVLGSKPVSSSTLPSKPKSFQ 223

Query: 340 V 338
           V
Sbjct: 224 V 224


>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 485

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 259 ITGQQDVPLACVDLGHVRVCGHGTAHRPGSVVVAQAGPS 375
           I     V  ACV LG +    H +  R  S++V +AG S
Sbjct: 34  IAVSSSVTTACVILGTLEFRKHRSIRRLQSMIVPEAGKS 72


>SPBC3F6.01c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 398 DEPTCDQLKAMWRFSKRQARAPEIMNEVSSYRDP 499
           D  T DQL+ + RFSK+Q     +M E+  + DP
Sbjct: 334 DNVTLDQLRNIDRFSKKQPGQSGLMMEM-LWTDP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,882
Number of Sequences: 5004
Number of extensions: 55003
Number of successful extensions: 128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)