Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b05f
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427           31   0.77 
06_03_0094 + 16573075-16573268,16574636-16574996                       31   1.0  
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    29   2.3  
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144...    29   3.1  
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141...    28   5.4  
05_01_0380 + 2978256-2979284                                           28   5.4  
03_05_0585 + 25869955-25869984,25870092-25870182,25870402-258705...    27   9.4  
02_03_0204 - 16369800-16371758,16372260-16372331                       27   9.4  

>09_02_0097 - 4232707-4232991,4233672-4233913,4234253-4234427
          Length = 233

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 19/85 (22%), Positives = 34/85 (40%)
 Frame = -1

Query: 535 HSCVDRPFIVHQRVSVGAHFVHDLGSTGLSLRESPHRLELIASRFILVDVPVTNSGRPGR 356
           H C+D+   ++  +SVG  F H   S G  L +  H LE  +       + + ++     
Sbjct: 57  HLCLDKESAMYLNISVGGSFAHKTRSEGGKLLD--HILENTSFAHCETIIEIEDTHEEST 114

Query: 355 QQRFLVDALCHDRTRAHGQGPRTPE 281
            +     ++ HD        PR P+
Sbjct: 115 SESEYATSISHDSNVESSPEPREPK 139


>06_03_0094 + 16573075-16573268,16574636-16574996
          Length = 184

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 517 ACL-HSCAQSRPKVPLPVPDDASRSLRQSCYESSPQRRSHP 636
           ACL H C  S P  P P  +DA      +C    P RR+ P
Sbjct: 15  ACLLHGCLVSLPPPPPPALEDARNHRHTTCPRLPPVRRAPP 55


>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
            2053164-2053250,2053476-2053684,2054115-2054340,
            2054473-2054510,2054657-2054714,2055363-2055662,
            2055832-2055903,2055988-2056112,2056240-2056312,
            2056417-2056521
          Length = 1218

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = +2

Query: 527  TAVPRAAPRFRYQYPTMPREAYGRVVTKAPPNVVRTP 637
            T  PR   R     P  PR A  R  T++PP V  TP
Sbjct: 1018 TRTPRGPRRPAGAVPPTPRRAALRATTRSPPAVAATP 1054


>02_03_0205 -
           16411707-16412759,16413077-16413256,16413960-16414498,
           16414798-16414825
          Length = 599

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 475 VHDLGSTGLSLRESPHRLELIASRFILVDVPVTNSGRPGRQ 353
           +H LG TG++ + S   L  IA+  +L  + + + G PG Q
Sbjct: 516 LHKLGLTGVNKKNSQAVLSAIANLVLLHSLSLRSEGEPGLQ 556


>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
            1414639-1414725,1416244-1416411,1416785-1416958,
            1417662-1417720,1418132-1420154,1420549-1420647,
            1420998-1421796,1422101-1422120,1422446-1422513
          Length = 1827

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -2

Query: 444  FENLHIALS*SQVGSSLLMSRSRTRAGLGDNNASWSMRCAMTAHAHMAKVH 292
            F+NLH+ L   +V SS L  R        D  A+  +  A TA AH A +H
Sbjct: 944  FDNLHMQLGFEKVASSSL-QRVTATIQCEDATAAAEVEEAKTALAHAADLH 993


>05_01_0380 + 2978256-2979284
          Length = 342

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 398 PC*CPGHELGPAWATTTLPGRCAVP*PHTRTWPRSTHAR 282
           PC CPG   G   +T  L    A     T +WP +T+ R
Sbjct: 165 PCHCPGERCGFVGSTVALQDHIAA----THSWPCTTNVR 199


>03_05_0585 +
           25869955-25869984,25870092-25870182,25870402-25870551,
           25870687-25870774,25871096-25871590,25871755-25871890,
           25872117-25872310,25872421-25872529,25872685-25872796,
           25873260-25873339,25873503-25873607
          Length = 529

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 610 FRNNSAVSFARHRRVLVAEPWGGSGHSCVDRPFIVHQRVSVGA 482
           F   S  SF R  R+ + +P     HS VDR F V  R+S G+
Sbjct: 194 FHRRSFQSFNRSSRIDMMDP-----HSLVDRRFSVCDRISFGS 231


>02_03_0204 - 16369800-16371758,16372260-16372331
          Length = 676

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 475 VHDLGSTGLSLRESPHRLELIASRFILVDVPVTNSGRPGRQ 353
           +H LG TG++ + S   L  IA+  +L  + +   G PG Q
Sbjct: 463 LHKLGLTGVNKKNSQAILSAIANLALLHSLSLQAEGEPGLQ 503


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,716,516
Number of Sequences: 37544
Number of extensions: 422226
Number of successful extensions: 1275
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)