Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b05f
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      29   2.4  
SB_27387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      28   7.3  
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_12354| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               27   9.7  

>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/46 (41%), Positives = 24/46 (52%)
 Frame = +3

Query: 486 PTETR*CTMNGLSTQLCPEPPQGSATSTRRCLAKLTAELLRKLPPT 623
           PT  R C ++  ST+ CP     +A ST RC A  T +L R   PT
Sbjct: 8   PTTER-CQLDYPSTERCPA--NLTAPSTERCPANWTTQLQRDALPT 50


>SB_27387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +2

Query: 377 RDRDINKDEPTCDQLKAMWRFSK--RQARAPEIMNEVSSYRDPLMYNEWP-VYTAVPRAA 547
           +D D N DE    + K  W F+         + +N+ +SY + ++++EW   Y ++ R  
Sbjct: 286 KDNDQNGDENCAAKFKGAWWFTDCFSSHLNGKYLNDSTSYGEGIIWSEWKGHYLSLKRTE 345

Query: 548 PRFRYQYPTMPREAY--GRVV 604
            + + +     RE Y  GR V
Sbjct: 346 MKIKPRVLLEIREKYRKGRAV 366


>SB_51371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = +2

Query: 419 LKAMWRF---SKRQARAPEIMNEVSSYRDPLMYNEWPV----YTAVPRAAPRFRYQYPTM 577
           L+  W+F   SKR+ +   +   +  Y+ PL++ E P+    +   P  A R  Y  P++
Sbjct: 544 LELAWKFKMASKRKRKKKRVGETMERYKTPLVFAESPIEGDKHYRTPVQAARNPYLAPSI 603

Query: 578 PREAY 592
           P + +
Sbjct: 604 PVDEF 608


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/65 (20%), Positives = 26/65 (40%)
 Frame = -1

Query: 625 DVGGSFRNNSAVSFARHRRVLVAEPWGGSGHSCVDRPFIVHQRVSVGAHFVHDLGSTGLS 446
           D    F+++    + RH++ L  +P G      +  P    +   V     +D G   L 
Sbjct: 565 DKSQQFQDSLQAHYTRHQQSLTVDPMGDDNDQQLSSPRHAQRSRKVSTELNNDTGQQMLQ 624

Query: 445 LRESP 431
           ++ +P
Sbjct: 625 IKHAP 629


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/64 (23%), Positives = 30/64 (46%)
 Frame = +2

Query: 446 RQARAPEIMNEVSSYRDPLMYNEWPVYTAVPRAAPRFRYQYPTMPREAYGRVVTKAPPNV 625
           +Q +A  I NE  + +    + ++P Y    +   ++ +QYP   ++  G+    APP  
Sbjct: 114 QQQQASPIQNEFQAKQ---AFQQYPNYQQYQQQYQQYYHQYPPYQQQNPGQFPPTAPPGF 170

Query: 626 VRTP 637
            + P
Sbjct: 171 NQPP 174


>SB_12354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 356 SPRPARVRDRDINKDEPTCDQLKAMWRFSK 445
           +P P R RDR  + D PT   L++  RF K
Sbjct: 36  TPSPLRSRDRFRDSDSPTPSPLRSRDRFRK 65


>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 388 HQQG*TYLRSAQGDVEILEATSPCSRDHERSELLQRPVDVQ 510
           H +G ++LR     ++  +  S CS DH + + ++  VD+Q
Sbjct: 476 HTKGISFLRDDIFYLQFSDWISVCSSDHNKMDRVRASVDIQ 516


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,337,810
Number of Sequences: 59808
Number of extensions: 467251
Number of successful extensions: 1486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)