Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b05f
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ...    31   0.91 
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
            protein F54C4.3 protein.
          Length = 1145

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = +2

Query: 329  QRIDQEALLSPRPARVRDRDINKDEPTCDQLKAMWRFSKRQARAPEIMNEVSSYR---DP 499
            Q +DQE++L P P R   R + +     D      RF++ +   PE+M  ++++    D 
Sbjct: 966  QELDQESVLPPPPRRETTRSVVRSRKRRD------RFAELRDCPPEVMRAIAAHAIAYDG 1019

Query: 500  LMYNEWPVYTAVPRAAPRFRYQYPTMP 580
                + P+   VPR A       PT P
Sbjct: 1020 RKKEQRPI-VYVPRQAKMAMSSTPTAP 1045


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical
           protein F30H5.3 protein.
          Length = 1599

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
 Frame = +3

Query: 258 YYRTTG-CSSGVRGPWPCARVRSWHSASTRKRC-------CRPGRPEFVTGTS 392
           Y   TG C   +  PW    ++S ++  TR+ C       C+ G P+++TG++
Sbjct: 355 YNAVTGTCEQFMWDPWDETEMQSPNNFKTREHCESYCRDTCKRGSPQYLTGSA 407


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 233 IEFRGRRALLPDNRMFLWRAWTLAMCACAVMAQ---RIDQEALLSPRPA 370
           +E    +ALLP      W +WT    +C    +   RI Q  LL P PA
Sbjct: 386 VEVEACKALLPCPTWSSWMSWTGCGNSCGKSIERRSRICQNGLLCPGPA 434


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = +2

Query: 233 IEFRGRRALLPDNRMFLWRAWTLAMCACAVMAQ---RIDQEALLSPRPA 370
           +E    +ALLP      W +WT    +C    +   RI Q  LL P PA
Sbjct: 386 VEVEACKALLPCPTWSSWMSWTGCGNSCGKSIERRSRICQNGLLCPGPA 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,987
Number of Sequences: 27780
Number of extensions: 339090
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)