Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b05f
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.6  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   7.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   7.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   7.6  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 449 QARAPEIMNEVSSYRDPLMYN 511
           +AR  EI  EVSSY   + YN
Sbjct: 164 EARFEEIKKEVSSYIKKIGYN 184


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 156 LRLLF*AKRTPKVHSALQICE 94
           LR +   + TP+VH A+  C+
Sbjct: 94  LRNIVQFRNTPEVHQAINTCQ 114


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 316 TRAHGQGPRTPEEHPV 269
           T+ HGQ P T  ++PV
Sbjct: 723 TKYHGQYPNTQIQNPV 738


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 449 QARAPEIMNEVSSYRDPLMYN 511
           + R  EI  EVSSY   + YN
Sbjct: 91  ETRFEEIKKEVSSYIKKIGYN 111


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 449 QARAPEIMNEVSSYRDPLMYN 511
           + R  EI  EVSSY   + YN
Sbjct: 107 ETRFEEIKKEVSSYIKKIGYN 127


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 449 QARAPEIMNEVSSYRDPLMYN 511
           + R  EI  EVSSY   + YN
Sbjct: 164 ETRFEEIKKEVSSYIKKIGYN 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,700
Number of Sequences: 438
Number of extensions: 4297
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)