Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b04r
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   5.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.4  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 523 LLNKYLLYTII*STLRVI 470
           LL KYLL+T++  TL V+
Sbjct: 298 LLGKYLLFTMVLVTLSVV 315


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 523 LLNKYLLYTII*STLRVIY*ILTCIL 446
           LL KYLL+T+I  TL +   I  C+L
Sbjct: 311 LLGKYLLFTMILVTLSIW--ITVCVL 334


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 506 PIHYNIKYI 480
           P+HYNI YI
Sbjct: 333 PLHYNINYI 341


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 533 TYVTFEQVPPIHYNIKYITCYLLDFNLHFNVPLFG 429
           TY T  Q+  +HY I +IT   ++    F   ++G
Sbjct: 502 TYDTICQLNIVHYGIGFITQSDIELANTFKAIIYG 536


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 140 IFDIV*HYLN*MYSRIQTFLQPSNFILQERSLYEMGIYNFNDTIII 3
           +FD +  +L+  YS  + F    NF     SL  + +++F +   I
Sbjct: 79  LFDKIRVFLDEDYSSAEHFTALGNFYFVHESLKNVLLWDFQECTFI 124


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 523 LLNKYLLYTII*STLRVI 470
           L+ KYLL+T I +T+ ++
Sbjct: 295 LIAKYLLFTFIMNTVSIL 312


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 523 LLNKYLLYTII*STLRVI 470
           LL KYLL+T+I   L V+
Sbjct: 297 LLGKYLLFTMILVGLSVV 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,529
Number of Sequences: 438
Number of extensions: 3754
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)