Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b04f
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.55 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.96 
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   1.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.8  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   6.8  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 206 KDVKLENGNAPGASNGTSSKSEDNA 280
           K VK  NGN    S+ + S SE+N+
Sbjct: 392 KHVKTHNGNGKKGSSDSCSDSEENS 416


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 320 GDPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGID 469
           GDP      +TL   D W++  + +  + I T +    F  +K    G+D
Sbjct: 21  GDPTERDLIVTLDDRDLWLR-FECLTNEMIVTKNGRRMFPVVKVTAAGLD 69


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 335 DGKAITLSQSDKWMKQAKVIDGKKITTTDTAIH-FKKLKSVKLGIDDYQKFLDDLAKNKK 511
           D + + L+ S + ++Q K++   +       +  F++L   K   D Y+KF +  +KN K
Sbjct: 379 DSEDLPLNISREMLQQNKILKVIRKNLVKKCLELFEELAEDK---DGYKKFYEQFSKNIK 435

Query: 512 VELDE 526
           + + E
Sbjct: 436 LGIHE 440


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 499 REII*KLLVVVDAEFYRFE 443
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 499 REII*KLLVVVDAEFYRFE 443
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 499 REII*KLLVVVDAEFYRFE 443
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 499 REII*KLLVVVDAEFYRFE 443
           R +  K L VVD ++Y FE
Sbjct: 594 RRVAQKYLRVVDPDYYEFE 612


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +1

Query: 568 ITRYKITGS-RSGRRSIDRHKQIY 636
           IT Y +      GR+ + +H+QIY
Sbjct: 11  ITDYDLNNEFYRGRKKLSKHQQIY 34


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 541 QLLLNFVKFHFF 506
           Q ++ F+K+HFF
Sbjct: 81  QFIVRFMKYHFF 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,195
Number of Sequences: 336
Number of extensions: 3040
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)