Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b04f
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    32   0.47 
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140...    30   1.9  
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    28   5.7  
01_06_0751 + 31690411-31690443,31692900-31694240                       28   5.7  
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662...    28   7.6  
06_01_0136 + 1043888-1044487                                           28   7.6  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 26/95 (27%), Positives = 46/95 (48%)
 Frame = +2

Query: 374 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 553
           M+ A  I  +    TD ++  +  K +K   D+  + +D   K + +E DE+++++  C 
Sbjct: 142 MEAALEISSRWPRVTDASL-LRWRKKLKRTSDECSQIMDR-CKRRAMEDDEMEQEVRQCA 199

Query: 554 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRF 658
            P   +H TKS  ++    +  D S  T S  QRF
Sbjct: 200 FPKRIAHATKSFISSFTGQKKVD-SLITTSTIQRF 233


>03_05_0599 -
           26012956-26013316,26013444-26013736,26013813-26014040,
           26014666-26014897,26015392-26015475,26015562-26015623,
           26016263-26016367,26016458-26016481
          Length = 462

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +2

Query: 26  ATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 205
           AT G+++ A  +A+   L AT  +   M  S +    L      E Q  D  + + T  V
Sbjct: 115 ATLGTVATAVANANATALEATKEIEAAMKVSMRAALGLGANNPKEGQLDDLTIMKETLRV 174

Query: 206 KDVKLEN 226
           KD +L+N
Sbjct: 175 KDEELQN 181


>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
            19704362-19704416,19704508-19704624,19704718-19705413,
            19706358-19706393,19707190-19708236
          Length = 1062

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 328  QVRWKSHHALAKRQMDEASQSH*WKENNNNGHGHSLQKTQIGKTR 462
            ++RWK      K++ ++A  S    ENNN    H   K Q    R
Sbjct: 1006 KLRWKGQKMSKKKEDEDAELSRLKAENNNAEEAHGDAKRQFDSIR 1050


>01_06_0751 + 31690411-31690443,31692900-31694240
          Length = 457

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +2

Query: 422 TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 601
           TAI F  ++  +LG D   K +D L +N K  +DE+  +      P   S  T+ P    
Sbjct: 164 TAIRFYDVQD-RLGYDRPSKAVDWLMRNAKAAIDELPDRAEAPPPPAAAS--TEQP---E 217

Query: 602 AVDRLTDTS 628
           A ++ T TS
Sbjct: 218 ATEQATSTS 226


>08_01_0008 -
           65366-65497,65588-65759,65846-65972,66058-66140,
           66232-66329
          Length = 203

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 146 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 253
           ++S EAQ  + AVE    + K  K  N N  GA  G
Sbjct: 57  RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92


>06_01_0136 + 1043888-1044487
          Length = 199

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 654 RCLCEPVYLLVSVNRSTAAAAAGDFVTC 571
           R  C  VY +V+ N+S AAAA+   + C
Sbjct: 170 RVSCSDVYFVVADNKSAAAAASSTPIDC 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,259
Number of Sequences: 37544
Number of extensions: 350668
Number of successful extensions: 1084
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)