Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b04f
(659 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 1e-06
SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 3.4
SB_50667| Best HMM Match : LIM (HMM E-Value=0.95) 29 3.4
SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7) 29 4.4
SB_38051| Best HMM Match : LIM (HMM E-Value=0.34) 29 4.4
SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079) 28 5.9
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 28 5.9
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_32881| Best HMM Match : DUF75 (HMM E-Value=1.7) 28 7.7
SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_12992| Best HMM Match : LIM (HMM E-Value=0.16) 28 7.7
SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07) 28 7.7
SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51) 28 7.7
>SB_34003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 50.8 bits (116), Expect = 1e-06
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Frame = +2
Query: 368 KWMKQAKVIDGKKITTTDTAIHFKK--LKSV---KLGIDDYQKFLDDLAKNKKVELDEIK 532
K + K+ D KK T D+ I F + +KS K+ ++ L A+ K + +++
Sbjct: 34 KLFRDLKIYD-KKFTQIDSDIIFNRPEVKSKSERKVNFSQFKAALSLCAEKKYGKREDVI 92
Query: 533 KKLTT-CGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRF 658
K + C G + T A AVDRLTDT KYTGSH++RF
Sbjct: 93 KLVDKICEGKGPVASKTTKVVKAGAVDRLTDTRKYTGSHKERF 135
>SB_52992| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 43.6 bits (98), Expect = 1e-04
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Frame = +2
Query: 401 KKITTTDTAIHFKKLK-----SVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTT-C-GQP 559
+K T+TDT I F + + K+ + ++ L A+ K D++ K C G+
Sbjct: 388 QKFTSTDTDIIFSRTEVKPKTERKINFNQFKVALGLCAEKKFGSKDQVGKLTEKICKGKG 447
Query: 560 GITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRF 658
TS TK+ V+RLTDT YTGSH++RF
Sbjct: 448 PATSGATKA-VKVGGVERLTDTKCYTGSHKERF 479
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 31.1 bits (67), Expect = 0.83
Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Frame = +2
Query: 197 QEVKDVKLENGNAPGASNGTSSKSE----DNALXXXXXXXXXXXXGDPKSDGKAITLSQ- 361
++ K+VK + G ++GTS KSE + P+ K I S+
Sbjct: 483 EKKKEVKKKKGKEKSTTSGTSKKSEAEIQEKKEIKVEEAKPVAKSDKPQESVKDIERSEV 542
Query: 362 -----SD-KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGID--DYQKFLDDLAKNKKVE 517
+D K ++A +I+ +K++ + + K + VK+ + D +++L +N+++E
Sbjct: 543 YQKLATDYKNTEKALLIEQEKLSEMEKELENSKDEKVKIEQEKADLDIAIENLKRNQEIE 602
Query: 518 LDEIKKKL 541
L+E+K +
Sbjct: 603 LEELKDNI 610
>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 969
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTD 622
E +KK T CG + TKS A ++DRL D
Sbjct: 915 ETEKKCTVCGAQLLLQGYTKSHAQCFSIDRLDD 947
>SB_39062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 254 TSSKSEDNALXXXXXXXXXXXXGDPKSDGKAITLSQSDKWMKQA-KVIDGKKITTTDTAI 430
T +K+ED PKS KA DK K+ K D K +T + +
Sbjct: 8 TPTKTEDRVPAKKRKLSETKLKSSPKS-AKATPSKTGDKQRKKTPKDQDTNKGSTDNADV 66
Query: 431 HFKKLKSVKLGIDDYQKFLDDLAKNKKVE 517
K+ K KL DY F +L + ++
Sbjct: 67 EIKRDKQGKLVFPDYPDFKPNLTPKEVMQ 95
>SB_35587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 625
+ +KK T CG P + TKS ++DRL D+
Sbjct: 899 DAEKKCTVCGTPLLFQGYTKSHPQCFSIDRLDDS 932
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.1 bits (62), Expect = 3.4
Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 8/149 (5%)
Frame = +2
Query: 143 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASN-GTSSKSEDNALXXXXXXXXXXXX 319
+++ E ++++ +E++D+ L+ G + + N G SE +A
Sbjct: 1716 QEVEHELDRAKKRIQELEEEIRDLMLKLGTSRESDNQGDKQNSEMSARINSLEKRITTLQ 1775
Query: 320 GDPKSDGKAIT-----LSQ-SDKWMKQAKVIDGKKITTTDTAIHFKKLKSVK-LGIDDYQ 478
G + + I L++ SD + +K I+ I D + ++K K L I+D +
Sbjct: 1776 GQAQDKDEEIAQLKRKLNEYSDGLGQGSKDIETHLIEIKDKSEIYRKADKAKALVIEDLR 1835
Query: 479 KFLDDLAKNKKVELDEIKKKLTTCGQPGI 565
L ++ELD +KK L Q G+
Sbjct: 1836 AEKTSL----EIELDNLKKDLEFAKQTGV 1860
>SB_50667| Best HMM Match : LIM (HMM E-Value=0.95)
Length = 318
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 625
++ KK T CG + TKS ++DRL DT
Sbjct: 264 DVDKKCTVCGTQLLLQGYTKSHLQCFSIDRLDDT 297
>SB_9774| Best HMM Match : DUF1572 (HMM E-Value=9.7)
Length = 504
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 168 FCASVDIFLYKCLMYLCDDIIYYASESVADRRLSD 64
F AS DI +CL D +IY AS + D L D
Sbjct: 153 FIASEDILQIQCLYPDTDSVIYIASPAALDPPLGD 187
>SB_38051| Best HMM Match : LIM (HMM E-Value=0.34)
Length = 168
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKY 634
+ +KK T CG + TKS ++DRL D+ Y
Sbjct: 114 DAEKKCTVCGTQLLLQGYTKSHPQCFSIDRLDDSQVY 150
>SB_56500| Best HMM Match : Tctex-1 (HMM E-Value=0.0079)
Length = 502
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 327 PSPMEKPSRSRKATNG*SKPKSLMERK*QQRTRP 428
P P P SRK + G KP SL E K ++ T P
Sbjct: 296 PPPTPPPKPSRKHSLGTRKPISLQESKQRRNTDP 329
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Frame = +2
Query: 143 RKMSTEAQNTDAAV----EQVTQEVKDVKLENGNAPGASNGTS--SKSEDNALXXXXXXX 304
++++ +A + DA+V + +DV + S+GT SK +
Sbjct: 720 QEVTRDAASQDASVTTQGNTSHRNTRDVMSQENTIDMTSHGTIMISKKRELTSQDANKTS 779
Query: 305 XXXXXGDPKSDGKAITLSQSDKWMKQAKVIDGKK 406
G P DGK + S +K + KV GKK
Sbjct: 780 KKTTKGLPSWDGKELVTSHKNKRVTSGKVESGKK 813
>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 419 DTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKL 541
D+ F++L LG+DD + ++D N K D KKKL
Sbjct: 400 DSEQMFQQLNHEVLGVDDDEDSVNDEENNSKTGNDLYKKKL 440
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 2 ASIKQQGKATAGSISAATKSASLKRLSATDSLA*Y---MISSHKYIKHL*RKMSTEAQNT 172
+S KQ+ A + A T+ + ++ DS + Y +++ I+ KMS+E
Sbjct: 865 SSAKQEADALKDEVKALTQQLLRQHDASLDSRSKYEKLIMNIRGEIEREREKMSSERHTL 924
Query: 173 DAAVEQVTQEVKDV 214
+ +EQ T+E KD+
Sbjct: 925 ASQLEQATRENKDL 938
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 323 DPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 502
+PKS T + K + K G+K HFKK V G D ++ + D +
Sbjct: 461 EPKSKSNISTFDKKQK-SRLRKFSKGRKDDILKAKRHFKKGHKVSEGADAHESYEDSRSS 519
Query: 503 NKKV 514
++ V
Sbjct: 520 SENV 523
>SB_32881| Best HMM Match : DUF75 (HMM E-Value=1.7)
Length = 462
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQR 655
+ +KK T CG + TKS ++DRL D+ + + R +
Sbjct: 418 DAEKKCTVCGTQLLLQGYTKSHPQCFSIDRLDDSQGLSCNRRHK 461
>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 338 GKAITLSQSDKWMKQAKVIDGKKIT--TTDTAIHFKKLKSVKLGID-DYQKFLDDLAKNK 508
GK I + + KW+ I +K T IH K++ VKL ID D +K LD ++K
Sbjct: 68 GKVIQVYRK-KWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSK 126
Query: 509 KVE 517
E
Sbjct: 127 LAE 129
>SB_12992| Best HMM Match : LIM (HMM E-Value=0.16)
Length = 411
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 625
+ KKK T CG + TKS ++DRL D+
Sbjct: 357 DAKKKCTVCGTQLLFQGYTKSHPQCFSIDRLDDS 390
>SB_50496| Best HMM Match : FHA (HMM E-Value=7.8e-07)
Length = 766
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 446 KSVKLGIDDYQKFLDDLAKNKKVELDE 526
K V++ D+ + FLD LAK K+E DE
Sbjct: 719 KLVRVSSDENELFLDYLAKRAKLERDE 745
>SB_25592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 625
E +KK T CG + TKS ++DRL D+
Sbjct: 676 EAEKKCTVCGAQLLLQGYTKSHPQCFSIDRLDDS 709
>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
Length = 1039
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 524 EIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDT 625
+++KK T CG + TKS ++DRL D+
Sbjct: 985 DVEKKCTVCGTQLLFQGYTKSHPQCFSIDRLDDS 1018
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,725,590
Number of Sequences: 59808
Number of extensions: 406416
Number of successful extensions: 1591
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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