Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b04f
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   6.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 518 LDEIKKKLTTCGQPGITSHVTKS 586
           +D I  KLT   QPG+T+ +  S
Sbjct: 641 MDAICTKLTADCQPGVTAFIVTS 663


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 636 VYLLVSVNRSTAAAAAGDFVTCDVIP 559
           +Y+L+++ R +A     +F TC   P
Sbjct: 99  IYILMAILRMSADGGCRNFSTCSSHP 124


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 636 VYLLVSVNRSTAAAAAGDFVTCDVIP 559
           +Y+L+++ R +A     +F TC   P
Sbjct: 98  IYILMAILRMSADGGCRNFSTCSSHP 123


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 143 RKMSTEAQNTDAAVEQ-VTQEVKDVKLENGNAP 238
           RK+  E + TD  + Q + ++V D +L NG  P
Sbjct: 382 RKLDEEMKRTDELLYQMIPKQVAD-RLRNGENP 413


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 657 KRCLCEPVYLLVSVNRSTAAA 595
           +RCLCE +Y  + ++    AA
Sbjct: 324 RRCLCEYLYKQLELHTEDRAA 344


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 168 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 70
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 279 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 168 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 70
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 279 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/33 (21%), Positives = 18/33 (54%)
 Frame = -3

Query: 168 FCASVDIFLYKCLMYLCDDIIYYASESVADRRL 70
           +  S+D++L  C + +   ++ YA+     +R+
Sbjct: 218 YVKSIDVYLGTCFVMVFASLLEYATVGYMAKRI 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,874
Number of Sequences: 438
Number of extensions: 3290
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)