Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b02r
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)                   32   0.58 
SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)                32   0.58 
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)                 29   3.1  
SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)              29   4.1  
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   29   4.1  
SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018)                  29   5.4  
SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)            29   5.4  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             28   7.2  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   9.5  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   9.5  

>SB_32622| Best HMM Match : Ank (HMM E-Value=2.2e-05)
          Length = 509

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
 Frame = +3

Query: 531 HGATDDGVLSVDQFVHKAVQLEHVEAFVVDAHEPAHAVVLG-TQEDADHSIDSFVGHDIN 707
           HG + + + S  Q  H  V  +H    V D H+  H  V   T+    HS ++      +
Sbjct: 339 HGHSTNTITSRSQHQHDHVTAQHQHDHVTDQHQHDHVTVTAPTRSRHGHSTNTITSRSQH 398

Query: 708 RHLERMVIEAAHAGHKGH 761
           +H   + + A      GH
Sbjct: 399 QH-NHVTVTAPTRSRHGH 415


>SB_20346| Best HMM Match : Herpes_UL3 (HMM E-Value=2.7)
          Length = 461

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 69  VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHVNRSV 227
           +   +G ++   DH+ G+H +       +  VDH +  +H + +E  HV R V
Sbjct: 140 IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIREV 191



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +3

Query: 69  VRVQVGEIVLHHDHLRGVHGLAGVRHAEVFSVDHYVSELHVVSEEARHV-NRSVKWISER 245
           +   +G ++   DH+ G+H +       +  VDH +  +H + +E  HV  + V  + E 
Sbjct: 79  IETDMGHVIREVDHVIGIHKIEKEVDHVIREVDHVIG-IHKIEKEVDHVIKQKVGHVIEV 137

Query: 246 HGGDT 260
           H  +T
Sbjct: 138 HKIET 142


>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
          Length = 192

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = -3

Query: 219 D*HGELLH*QHEVR*---RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGH---AGQ 58
           D H E  + +HE R    RND ++  RH   + D     D HDE R+      H     +
Sbjct: 121 DRHDEERNNEHEDRHDKGRNDDEEEDRHDGERNDDEE-EDRHDEERNDDEEDRHDEKRNE 179

Query: 57  EDLQRRHDDEQHD 19
           ++ + RHD+++HD
Sbjct: 180 DEEEDRHDEDRHD 192



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 174 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQR--RHDDEQHDELITRH 1
           RN+ +   RH E + D     DGHDE R++     H  + + +   RHD+E+++E   +H
Sbjct: 43  RNN-EHEDRHDEERNDEDE--DGHDEERNNEHEDRHDEERNNEHEDRHDEERNNEEEDKH 99



 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
 Frame = -3

Query: 219 D*HGELLH*QHEVR*RNDLQKRPRHVE-HQQDRGHLG-DGHDEGRSHLPGLGH---AGQE 55
           D H E  + +HE R  +D ++   H + H ++R +   D HDE R++     H      E
Sbjct: 61  DGHDEERNNEHEDR--HDEERNNEHEDRHDEERNNEEEDKHDEERNNEHEDRHDEERNNE 118

Query: 54  DLQRRHDDEQHDELITRH 1
           D + RHD+E+++E   RH
Sbjct: 119 D-EDRHDEERNNEHEDRH 135



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = -3

Query: 174 RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHDDEQHDELITRH 1
           R+D ++   H E + D+G   D  +E R      G    ++ + RHD+E++D+   RH
Sbjct: 122 RHDEERNNEH-EDRHDKGR-NDDEEEDRHD----GERNDDEEEDRHDEERNDDEEDRH 173


>SB_27251| Best HMM Match : Extensin_2 (HMM E-Value=0.077)
          Length = 1043

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 105 HDEGRSHLPGLGHA-GQEDLQRRHD--DEQH 22
           H+EG+  LPG  H+ GQ  +Q+R +   EQH
Sbjct: 789 HEEGQQQLPGGNHSPGQHHMQQRREALPEQH 819


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +3

Query: 390  QHKSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIH 533
            ++  LR++  ++   + +H L     HH   +Y  S K+L  ++ H+H
Sbjct: 1563 RYAELRKTAEKVYQSIAEHRLTQKYIHHSKEYYRHSSKILKSRTRHLH 1610


>SB_45773| Best HMM Match : TFIIB (HMM E-Value=0.0018)
          Length = 242

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 273 TSTTVLHHGHVQCGQEHTGADRRHDDVHLHLQTSNRTEGQHKSLRESVA 419
           TS TV+HH H   G+      ++ +   L+ +T NR+   +++  +S A
Sbjct: 179 TSLTVVHHIHDVMGKFSASPTQKGEVAQLYYRTKNRSSKLNRARPQSFA 227


>SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 390 APRYDWRFGDADVRHRVAGPHRYALAHIGHDHDEGPLCLSLELMYLH 250
           A R+D   GD DV+ +VA  H        HDHD   + L+L   YL+
Sbjct: 21  ASRHD--HGDGDVKIKVASRHD---PDKRHDHDNDTITLALRSRYLY 62


>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
          Length = 796

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 398 VSEGIRCETCTTSP*PLSGHLRKASFRFPLHDESKG 505
           VSE   C +      PLSGH R  S   PL D S G
Sbjct: 501 VSETTSCPSIDDPDGPLSGHTRPFSSMEPLSDPSAG 536


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/96 (23%), Positives = 44/96 (45%)
 Frame = +1

Query: 19  IMLLIIMTSL*VLLTSMSESR*VRSSFIMTISEVSTVLLVFDMPRSFL*IITSANFMLLV 198
           I LL +   L ++  S+  +  +  SF+M   E+ T+L +FD+P + L  + S  F + +
Sbjct: 445 ISLLCVTVVLFLVTASIRATIIIFFSFLMLALELVTLLCLFDVPLNQLTFVCS--FPVFI 502

Query: 199 KKLAMSIGLSNGYPRGMVEIHELQRQAQRSFIMVMS 306
                SI +S  +           R    +F+ ++S
Sbjct: 503 LSFLWSISVSQVFLISRFGPGRTTRTVNSTFVPLLS 538


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/58 (37%), Positives = 26/58 (44%)
 Frame = +3

Query: 396 KSLRESVARLAPPVLDHCLAISGRHHFAFHYTTSRKVLWDKSLHIHGATDDGVLSVDQ 569
           KSL+ES A       DHCLA  G +H A   T  R       LH    T +G L  D+
Sbjct: 51  KSLQESNAEYC----DHCLACGGDNHKARFCTLRRSF---TKLHTQNITRNGKLRWDK 101


>SB_16746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 654 SQVRLHGQAHERQRQTPRHVRAGQLYVQTGQRK 556
           +Q +LH +  E Q+Q PR VR  Q  +Q   R+
Sbjct: 12  AQQQLHRRVREAQQQLPRRVRGAQQQLQRRVRE 44


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = -3

Query: 192  QHEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQED----LQRRHDDEQ 25
            QH      D ++  +H + QQ+ G     HD+ + H     H  Q+      Q+RHD +Q
Sbjct: 1064 QHPSEQETDHEQPAQHDQQQQNTGQQQQ-HDKQQQHDQQQQHDQQQQHDQQQQQRHDQQQ 1122

Query: 24   --HDELITRH 1
              HD+   +H
Sbjct: 1123 QHHDQQQQQH 1132


>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -3

Query: 141 EHQQDRGHLGDGHDEGR--SHLPGLGHAGQEDLQRRHDDEQHD 19
           +HQQD+ H    H   R   H    GH+  E   RR  D  H+
Sbjct: 429 KHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRRASDHSHE 471


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -3

Query: 189  HEVR*RNDLQKRPRHVEHQQDRGHLGDGHDEGRSHLPGLGHAGQEDLQRRHD 34
            + +R R++  +      H+  R  L D H+  R+ L     A +  L+ RH+
Sbjct: 953  NRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNRLRDRHE 1004


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,143,251
Number of Sequences: 59808
Number of extensions: 590681
Number of successful extensions: 1893
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)