Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b02f
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0204 - 19022329-19023990                                         30   1.6  
06_03_0613 + 22748223-22749513,22750046-22750179,22751066-227513...    29   2.1  
04_04_0577 + 26349205-26349669,26350384-26350482,26350887-263510...    29   2.7  
10_08_0786 - 20540061-20542106                                         28   6.3  

>05_04_0204 - 19022329-19023990
          Length = 553

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 232 IEKSCDKYMNVDVVKQFMEMYKMGMLPRGETF 327
           + K CD++  + VVK F +M K G+ P   TF
Sbjct: 355 MRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTF 386


>06_03_0613 +
           22748223-22749513,22750046-22750179,22751066-22751309,
           22751401-22751609,22751691-22751740,22751933-22752053,
           22752138-22752383
          Length = 764

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = -3

Query: 377 TRKTLTASSIWSSLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAIS 210
           +R TL +  +W  L   K+    ++ +L ++ NCL  +   + S+++S L SL +S
Sbjct: 118 SRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHFSRMYS-LQSLVLS 172


>04_04_0577 +
           26349205-26349669,26350384-26350482,26350887-26351064,
           26351900-26352087,26352335-26352373
          Length = 322

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = +1

Query: 103 VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQF 282
           +F  + +  L  K +E      L  +++ T F D+ ++ ++Y      +K  N DVV   
Sbjct: 160 IFLLKSLDELFQKGREAVDFPALQELMEKTGF-DMDDVVRKYIRYTLNEKPFNPDVVVDL 218

Query: 283 MEMYKMGMLPRGETFVHTNEL 345
           + + K  ML   E     NE+
Sbjct: 219 IHLRKASMLEDAEVAEILNEI 239


>10_08_0786 - 20540061-20542106
          Length = 681

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 268 VVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKVFRVLYYAK 393
           V K  +EM KMG +PR E   H     +EE VK  ++ Y+++
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYH----DLEEEVKEQQLSYHSE 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,748,919
Number of Sequences: 37544
Number of extensions: 292318
Number of successful extensions: 763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)