Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11b02f
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40684| Best HMM Match : NIF (HMM E-Value=0) 30 1.6
SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 4.9
SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14) 28 6.4
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 28 6.4
SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5) 28 6.4
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28) 27 8.5
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35) 27 8.5
SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 304 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 474
+L ET VH + ++E+A F V Y + VF+RT ++ ER++ V FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279
Query: 475 A 477
+
Sbjct: 280 S 280
>SB_40678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +1
Query: 193 MFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVKV 369
+ ++I I K++ K +K MN++ + MEMY ML TF+ + + K+
Sbjct: 71 IMQEIGAIVKKHT-HKGEEKQMNINAIPNNMEMYMAFMLGNHLTFIDSFQFMSSSLEKL 128
>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 1011
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 415 TACWMRERINGGMFVYAFTAACFHR 489
TAC+ + I+GG+ V+++ + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860
>SB_41898| Best HMM Match : EGF_CA (HMM E-Value=3.9e-14)
Length = 1087
Score = 27.9 bits (59), Expect = 6.4
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Frame = +1
Query: 193 MFEDIKEIAKEYNI--EKSCDKYMNVDVVKQFMEMYKMGMLPRGETFVHTNELQMEEAVK 366
+ ++I I K++ K +K MN++ + ME Y ML TF+ + ++ M +++
Sbjct: 645 IMKEIGAIVKKHTDVNSKGEEKQMNINAIPNNMEKYMAFMLGNHLTFIDSFQV-MNFSLE 703
Query: 367 VFRVLYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTDCKGLYLPAPYEIYPYFF 546
+ Y +K F R R+ G++ Y + + F R D K LPA + Y +
Sbjct: 704 RLGLKYTSKSFK-GKRLDLMARK----GVYPYDYMDS-FERFDDK---LPAKEDFYSIMY 754
Query: 547 VDSHV 561
D H+
Sbjct: 755 -DQHI 758
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 461 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 553
+LLLP +A T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238
>SB_1865| Best HMM Match : DUF1168 (HMM E-Value=5)
Length = 289
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = -2
Query: 582 HHKGFTDDMAVN-EEVGIDLVRSGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHE 406
H KG + MA +E I + T S ++ S++ D H S SH +R P
Sbjct: 63 HEKGDQNPMATELDEKAISSRTTSANRTRRPDSYRSKNSENTDSHRSRKSESHQSRKPDS 122
Query: 405 NIEVLS 388
+ +S
Sbjct: 123 HRSCIS 128
>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
Length = 336
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 379 LYYAKDFDVFMRTACWMRERINGGMFVYAFTAACFHRTD 495
L+ ++F+V T C + ER N + + CF+ D
Sbjct: 70 LFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHED 108
>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
Length = 1076
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 163 KLLDHILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMY 294
++L+H +Q + E IK + I K C YM+ V Q + Y
Sbjct: 327 RVLEHFMQAFVPEIIKRLKDLAQIAKDCFTYMDRGFVFQMISYY 370
>SB_49641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 755
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 437 GSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLTAMSS 565
G+TEA SS ++ AST T +T + PT + A S
Sbjct: 316 GTTEALSSQSVISNASTTSTTSATTIAATGATTPTDTTQATPS 358
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +1
Query: 196 FEDIKEIAKEYNIEKSCDKYMNVDVVKQFMEMYKMG---MLPRGETFVHTNELQMEEAVK 366
+ +K ++ +YN +K+ + ++ F + + LP+ H + EEA+
Sbjct: 141 YSKLKTLSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDRKMAHLSMATTEEAID 200
Query: 367 VFRVLYYAKDFDVFMRTACWMRERIN 444
V D D+ R W +N
Sbjct: 201 ALIVSLSTVDADLCFRGFSWCDLPVN 226
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,428,021
Number of Sequences: 59808
Number of extensions: 324446
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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