Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b02f
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical pr...    31   0.60 
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    30   1.1  
Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    28   5.6  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and cap...    28   5.6  
AL132949-25|CAB61103.1|  209|Caenorhabditis elegans Hypothetical...    27   7.4  
Z82070-7|CAB04909.1|  321|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z82070-6|CAB04910.1|  321|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL132949-27|CAB61105.1|  209|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z49937-6|CAA90185.2|  453|Caenorhabditis elegans Hypothetical
           protein F14F3.3 protein.
          Length = 453

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 178 ILQPTMFEDIKEIAKEYNIEKSCDKYMNVDVVK-QFMEMYKMGMLPRGETFVHTNELQME 354
           I+ PT      ++    NIE S D  +N+D+ K +F + ++ GM     +      L + 
Sbjct: 272 IMGPTDLNAFDKLKTRENIEMSSDAIVNLDIPKVEFSDGFRDGMKAWNRSVQTWLALYVH 331

Query: 355 EAVKVFRV 378
             VKV RV
Sbjct: 332 SRVKVMRV 339


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +2

Query: 440 STEACSSTLLLPRASTEPTARVS-TCPLLTRSIPTSSLTAMSSVKPL 577
           + EA SST LL   ST  TA +S T   ++RSI   + TA ++++PL
Sbjct: 91  TNEASSSTKLL---STSSTAEISSTTRTVSRSIKPETSTASTTIRPL 134


>Z77657-6|CAB01150.2|  607|Caenorhabditis elegans Hypothetical
           protein F08H9.1 protein.
          Length = 607

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 420 RSPHENIEVLSVVEDSEDFD 361
           R+P+ENI++L   +DSED D
Sbjct: 581 RAPYENIDLLLSTDDSEDID 600


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 214 IAKEYNIEKSCDKYMNVDVVKQ 279
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 214 IAKEYNIEKSCDKYMNVDVVKQ 279
           +  + N+ + C+K+M +DV+KQ
Sbjct: 212 VQSDMNLNEDCEKWMEIDVLKQ 233


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 437 GSTEACSS---TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 553
           G+TE  S+   T      +TEPT   ST    T ++PTS+ T
Sbjct: 257 GTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTST 298


>AF047660-1|AAC04431.1|  900|Caenorhabditis elegans Osm-9 and
           capsaicin receptor-relatedprotein 2 protein.
          Length = 900

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = -3

Query: 341 SLVWTKVSPRGSMPILYISMNCLTTSTFMYLSQLFSMLYSLAISLMSSNMV 189
           + V T +   G   +LY ++     +T +++ ++  +L+ L +S+M  NM+
Sbjct: 709 AFVRTFILTIGEFTVLYRNLALCPANTMVWIGKVVFILFELFVSIMQFNML 759


>AL132949-25|CAB61103.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.29 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 516 GQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFF 352
           GQV  L+V   E   S ++  + + + F +  ++P E     ++V+  +DF G F
Sbjct: 51  GQVPVLSVDGFEIPQSAAIIRYLA-NKFGYAGKTPEEQAWADAIVDQFKDFMGSF 104


>Z82070-7|CAB04909.1|  321|Caenorhabditis elegans Hypothetical
           protein W04E12.8 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 437 GSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLT 553
           G+  A   T   P     P    +TCP +T  IPT+  T
Sbjct: 131 GTWSAIGCTSYRPYVCVTPVIMTATCPPITTPIPTTCPT 169


>Z82070-6|CAB04910.1|  321|Caenorhabditis elegans Hypothetical
           protein W04E12.6 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 437 GSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLT 553
           G+  A   T   P     P    +TCP +T  IPT+  T
Sbjct: 131 GTWSAIGCTSYRPYVCVTPVIMTATCPPITTPIPTTCPT 169


>AL132949-27|CAB61105.1|  209|Caenorhabditis elegans Hypothetical
           protein Y53F4B.31 protein.
          Length = 209

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = -2

Query: 516 GQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLELV 337
           GQV  L V   +   S ++  + + + F +  ++P E +   ++V+  +DF G F   ++
Sbjct: 51  GQVPYLTVDGFDIPQSAAIIRYLA-NKFGYAGKTPEEQVWADAIVDQFKDFMGSFRERIM 109

Query: 336 GVDEGLS 316
               G S
Sbjct: 110 AHFAGKS 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,910,645
Number of Sequences: 27780
Number of extensions: 231132
Number of successful extensions: 652
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)