Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b01r
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    77   1e-16
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    69   3e-14
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.4  

>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 77.0 bits (181), Expect = 1e-16
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
 Frame = -1

Query: 683 VRQPRLNHKPFT--VTIDIKSDVATNAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFV 510
           VR   L H+PFT  +T++ +S+       ++FL PK DE G P+   D  + F ELD F 
Sbjct: 472 VRFTHLQHQPFTYKITVNNQSNGNRKGTCRIFLAPKTDERGNPWLFRDQKIMFIELDKFT 531

Query: 509 QKVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLD----QGKIPTDMFNSSDT-MPSRLM 345
             +  GQ+ ITR+S+  +     ++P    ++ LD    QG      FN      P  ++
Sbjct: 532 VNLKQGQNTITRASSQSSV----TIPFERTFRNLDLNRPQGGEELAQFNFCGCGWPQHML 587

Query: 344 LPKGTYDGFPFQLFVFVYPYEPTPKESEP-------------FKSVVPDNKPFGYPFDR 207
           +PKGT +G   QLFV +  Y+    +                   + PD +  GYPFDR
Sbjct: 588 IPKGTPEGMKSQLFVMISNYDDDKIDQSTEGVCNDAGSYCGIKDKLYPDRRSMGYPFDR 646


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
            subunit 1 protein.
          Length = 682

 Score = 69.3 bits (162), Expect = 3e-14
 Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 25/203 (12%)
 Frame = -1

Query: 683  VRQPRLNHKPFTVTIDIKSDVATN-AVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQ 507
            VR   L ++ FT  I + +         ++FL P++DE G P+   +    F ELD F  
Sbjct: 472  VRFTHLQNQDFTYKITVNNSGNNRMGTCRIFLAPQFDERGNPWLFRNQKDMFIELDRFAV 531

Query: 506  KVNPGQSQITRSSTDFAFFKEDSLPMAEIYKLLDQGKIPT-----DMFNSSDT-MPSRLM 345
             +  G + ITR ST+ +     ++P    ++ LD  + PT       FN      P  ++
Sbjct: 532  SLKQGTNTITRHSTESSL----TIPFERTFRNLDANR-PTGGDALSEFNFCGCGWPQHML 586

Query: 344  LPKGTYDGFPFQLFVFVYPY---------EPTPKESEPF----KSVVPDNKPFGYPFDRP 204
            LPKGT  G+P  LFV +  Y           T  + + F      + PD +  GYPFDR 
Sbjct: 587  LPKGTEAGYPCHLFVMISNYADDRVEQDTSGTCSDGDTFCGIKDKLYPDRRSMGYPFDRM 646

Query: 203  VLP-----QYFKQPNMFFKKVLV 150
                    Q F  PNM  ++V++
Sbjct: 647  PRDGVDTLQQFLTPNMRVQEVVI 669


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 692 GYKVRQPRLNHKPFTVTI 639
           G K   P LNHKP  +TI
Sbjct: 253 GPKQELPDLNHKPLNLTI 270


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 692 GYKVRQPRLNHKPFTVTI 639
           G K   P LNHKP  +TI
Sbjct: 145 GPKQELPDLNHKPLNLTI 162


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 442 SSLKNAKSVDERVI*DWP 495
           S L+NAK VDE ++ + P
Sbjct: 471 SQLRNAKKVDEAILEERP 488


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,976
Number of Sequences: 336
Number of extensions: 3526
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)