Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b01r
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    34   0.14 
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   5.2  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   5.2  
03_02_0243 - 6744164-6744415,6744518-6745135                           29   5.2  
05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468     28   9.0  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   9.0  

>04_04_1457 -
           33741048-33741146,33741647-33741760,33741938-33742052,
           33742154-33742560,33743342-33743476,33743576-33743970,
           33744225-33744916,33745014-33745097,33745195-33745286,
           33745374-33745457,33745535-33745714,33746258-33746302,
           33746399-33746692,33747199-33747585,33747713-33747899,
           33748042-33748118,33748936-33749067,33749315-33749416,
           33749744-33749827,33749902-33749992,33750105-33750178,
           33750644-33750664,33751433-33751477,33752427-33752561,
           33752693-33752752
          Length = 1376

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 265 DSLGVGSYG*TNTNSWKGNPSYVPLGSISLEGIVSEELNMSVGIFPW 405
           D +G G+YG         N  +V +  +SLE I  E+LN+ +  F W
Sbjct: 24  DEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIPQEDLNIIMSTFMW 70


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 305 FVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDR 207
           F   +PYEPTP +++ F  V  D      P DR
Sbjct: 79  FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDR 111


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 288 RIDEYKQLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQEL 416
           +I  YK+ E + I   L +H+P + + + +EH+S    ++  L
Sbjct: 598 KISAYKRAENKVIETKLLEHRPEQDAKQRMEHLSEKKEMLNVL 640


>03_02_0243 - 6744164-6744415,6744518-6745135
          Length = 289

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 603 DDGVSGNIRFNIDCHSERLVV 665
           D  VSG+ RF++ C  ERLVV
Sbjct: 87  DVRVSGSARFDVQCRGERLVV 107


>05_06_0085 + 25441460-25443504,25444263-25444536,25445091-25445468
          Length = 898

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/66 (33%), Positives = 28/66 (42%)
 Frame = -1

Query: 350 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNM 171
           + LP G YD F +Q F   Y + P      PF S +P        FDR     Y      
Sbjct: 150 VFLPAGLYDRF-YQHFCKGYLW-PLFHYMLPFASALPAAASGDGRFDRGAWEAYVLANKY 207

Query: 170 FFKKVL 153
           FF+KV+
Sbjct: 208 FFEKVV 213


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 241 GTTDLNGSDSLGVGSYG*TNTNSWKGNPSYVPLG-SISLEGIVSEELNMSV 390
           G TD+ G D  G+  +G  +   +K   S  PLG  ++    V+  LN+SV
Sbjct: 55  GDTDVRGMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSV 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,738,549
Number of Sequences: 37544
Number of extensions: 361410
Number of successful extensions: 1040
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)