Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11b01r
         (743 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               33   0.18 
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       31   0.75 
SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)                 31   1.3  
SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)                     30   2.3  
SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)                 30   2.3  
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   4.0  
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           28   9.2  

>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = -1

Query: 614 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTDFAFFKEDSL 435
           N  V ++  PK  ++  P S+ D WM+ +E   FV+K+N  Q+ +  SS    F K+  +
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNM-QAVLCASSHTDEFVKDFLI 303

Query: 434 PMAEIYKLLDQ 402
            + +I  L+ +
Sbjct: 304 TLEKIPVLIHE 314


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 21/79 (26%), Positives = 42/79 (53%)
 Frame = -2

Query: 244 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR 65
           + T +  V+++++  + + S N    S +  +T+ +NYS +   +LT   + +NY+ L  
Sbjct: 76  YLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTLSKNYLT---LSKNYSTL-- 130

Query: 64  KSKRTLTITVYNSRISCEY 8
            SK  LT++   S +S  Y
Sbjct: 131 -SKNYLTLSKNYSTLSKNY 148



 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -2

Query: 199 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 35
           +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK  LT++ 
Sbjct: 69  YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125

Query: 34  YNSRISCEY 8
             S +S  Y
Sbjct: 126 NYSTLSKNY 134



 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/54 (22%), Positives = 34/54 (62%)
 Frame = -2

Query: 244 FRTTNHSVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRN 83
           + T +  ++++++  +L+ S  L  +  ++ ST+++NYS +   +LT+ +I ++
Sbjct: 155 YLTLSIKLLNTLSKNYLTLSIKLLNTLSKNSSTLRKNYSTLSRNYLTLRRIPQH 208


>SB_42303| Best HMM Match : RVT_1 (HMM E-Value=0.00019)
          Length = 736

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
 Frame = -1

Query: 527 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 366
           E  WF Q +N  +S  +   R +T F     D +P+   +I  + +D+ +IPTD++ SS 
Sbjct: 404 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 463

Query: 365 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVV 243
                + S  +   G  DG P  + +  + +E  P  +E + +++
Sbjct: 464 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNALL 507


>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -1

Query: 374 SSDTMPSRLMLPKGTYDGFPFQLFV--FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPV 201
           +++T P+ +++P GT       ++    + PY P P +  P  S        GYP   P 
Sbjct: 93  NTETSPNAVIIPPGTDPQLANLVYPPPSMAPYPPGPNQGTPPPSTQQQPGSGGYPMMYPQ 152

Query: 200 LPQYF 186
            P Y+
Sbjct: 153 QPGYY 157


>SB_34358| Best HMM Match : DUF1280 (HMM E-Value=7)
          Length = 359

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
 Frame = -1

Query: 527 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 366
           E  WF Q +N  +S  +   R +T F     D +P+   +I  + +D+ +IPTD++ SS 
Sbjct: 255 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 314

Query: 365 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 249
                + S  +   G  DG P  + +  + +E  P  +E + +
Sbjct: 315 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 356


>SB_17431| Best HMM Match : RVT_1 (HMM E-Value=1.8e-25)
          Length = 867

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
 Frame = -1

Query: 527 ELDWFVQKVNPGQSQIT---RSSTDFAFFKEDSLPMA--EIYKL-LDQGKIPTDMFNSSD 366
           E  WF Q +N  +S  +   R +T F     D +P+   +I  + +D+ +IPTD++ SS 
Sbjct: 490 EGQWFRQLINESESITSLCERINTFFCSLTSDFVPLTTDDILGIPVDESEIPTDLYVSSR 549

Query: 365 ----TMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKS 249
                + S  +   G  DG P  + +  + +E  P  +E + +
Sbjct: 550 EAGIALQSIKLRKAGGPDGIP-NIILKTFSFELAPVIAEIYNA 591


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 359 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 216
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -2

Query: 199 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 35
           +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK  LT++ 
Sbjct: 69  YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125

Query: 34  YNSRISCEY 8
             S +S  Y
Sbjct: 126 NYSTLSKNY 134


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 290 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQYFKQPNMFFKKV 156
           P+ P  +  +PF+SV P  +PF          Q  +QP+  F+ V
Sbjct: 509 PFRPGQQPQQPFRSVQPPQQPFRADQQTQQPFQSGQQPHQPFRSV 553


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -2

Query: 226 SVIHSIAPFFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR-KSKRT 50
           S+    AP  L+T+NN TC+ R+  +       PI + +L  H  K+    L   + K T
Sbjct: 19  SITTEDAPTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKAT 76

Query: 49  LTITVYN 29
            T+  YN
Sbjct: 77  ATMWHYN 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,195,084
Number of Sequences: 59808
Number of extensions: 427906
Number of successful extensions: 1195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)