Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a24r
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical pr...    59   3e-09
U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine r...    29   2.7  
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    28   8.3  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    28   8.3  

>Z92837-2|CAB07401.1|  324|Caenorhabditis elegans Hypothetical
           protein R03E1.2 protein.
          Length = 324

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 29/51 (56%), Positives = 34/51 (66%)
 Frame = -2

Query: 740 SADYAAIFNIILWFGVVFTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKKD 588
           S+DY AIF I L   V+    LI IV  +  +DP +DSIIYRMT TRMKKD
Sbjct: 274 SSDYPAIFAIFLGLVVILVVALIYIVVGMASIDPEKDSIIYRMTTTRMKKD 324


>U50199-5|AAA91265.1|  395|Caenorhabditis elegans Hypothetical
           protein T14F9.2 protein.
          Length = 395

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 129 GFMTSNRDQRMTITPQTEYSACLSYYLHTET----NYVLYNYSELLNRILNNPCK*QYPN 296
           GF      +R+ +TP+ E+   L   + TET    N   ++YS + +  + N C  QYPN
Sbjct: 210 GFRYDKSLERLDLTPEAEHHLPLHLPIFTETLDFNNPHKHDYSRVFSCYVRNDCT-QYPN 268


>AF024503-16|AAG24086.2|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein23 protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -1

Query: 546 VQYLFLYKFYGCFFY--QKTHSISIVTF*ICF--SFYNKLAFPRS 424
           V Y  LY + GCFFY  + +++  +V   +C+  S+Y+ + F  S
Sbjct: 133 VIYYILYDYLGCFFYYEKSSYTFWLVDTPLCYSVSWYSDILFNNS 177


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 737 ADYAAIFNIILWFGVV---FTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKK 591
           AD A +FN+++W  VV    T T+   VY   ++   R++  Y  T  RM K
Sbjct: 191 ADPATMFNVLIWLSVVIVTLTSTIATTVYLQRNL---RENEHYSETVVRMHK 239


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 737 ADYAAIFNIILWFGVV---FTFTLIAIVYALMDMDPGRDSIIYRMTNTRMKK 591
           AD A +FN+++W  VV    T T+   VY   ++   R++  Y  T  RM K
Sbjct: 191 ADPATMFNVLIWLSVVIVTLTSTIATTVYLQRNL---RENEHYSETVVRMHK 239


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 746 GYSADYAAIFNIILWFGVVFTFTLIAIV 663
           G++ ++  +FN   WF + F F  + IV
Sbjct: 196 GWTNNFLVMFNTFFWFSICFGFNSVLIV 223


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 534 FLYKFYGCFFYQKTHSISIVTF*ICF 457
           + Y F+ CFF   T S  + TF +CF
Sbjct: 194 YTYHFWACFFIFSTTSTEVFTF-VCF 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,138,126
Number of Sequences: 27780
Number of extensions: 357355
Number of successful extensions: 858
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)