Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a21f
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    28   1.3  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    27   1.8  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    27   1.8  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   2.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   2.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    27   2.3  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    26   4.0  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   5.3  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   7.1  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  

>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 152 CSSSRSSDRVF*CFLGHRPDPSSLQKQQQKRS 57
           C S + +D +  C+    P P++LQKQQQ  S
Sbjct: 571 CDSEKENDDLE-CYFRTPPKPTTLQKQQQSPS 601


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 83  ENLDPADDPKNIKRPCPN-FDLNCIREYFSRNSQCQLVMGSVP 208
           ++++  D+ +  K PC + F  NC++++   +  C L    VP
Sbjct: 112 DDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCPLCRKEVP 154


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -1

Query: 257 NYYSVYLLCSNLKVVDLVQIPLLIDIENFLRNIHE----CSSSRSSDRVF*CFLGHRPDP 90
           NY   YL    + V  L  IPLL  + N+ + ++E    CS+   ++R+  C     P P
Sbjct: 316 NYRQSYLRIDAIAVHKLKSIPLLSTVSNWFKKMYEHRANCSALIETERLS-CLQATIPLP 374

Query: 89  S 87
           S
Sbjct: 375 S 375


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 470 LEFHSQLPMRHFLQLALWLSYC 405
           LEF+S L  RHF+ L L   +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +2

Query: 308 IIEFYIN-----SKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLT 472
           +IE Y+N       TE +   A V   ++AS  T    +      + R D L +D     
Sbjct: 527 LIELYLNYDCISGNTENIYERAIVTLSRIASQST----SDPPPSFVFRDDQLVIDKPGF- 581

Query: 473 FTAVFPSISDL-QLSNAEVFSYVHEINPKF 559
              V+ +++D+ QL+++ + SYVH  NP +
Sbjct: 582 ---VYHTLNDIPQLNSSTIGSYVHSHNPPY 608


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 59  IASAVAFGENLDPADDPKNIKRPCPNF 139
           I S  A+GE L   D   NI+ P P+F
Sbjct: 23  INSNYAYGEQLQSNDQYNNIQHPAPSF 49


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 278 HHDILRLNYYSVYLLCSNLKVVDLVQIPLLIDIENFLRNIHECSSSRSSDRVF 120
           H D   +   S+ L    L  V  +QIP L  +     N+H   SS+S+D  +
Sbjct: 136 HPDYPTIEELSLSLFREKLMAVKNIQIPFLNSLLQSFENLH---SSKSTDHAY 185


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 512 SNAEVFSYVHEINPKFILGPLLSFSLDS 595
           +N  + S V  +NP  ++ PLL  SLD+
Sbjct: 44  TNRIMLSVVSSLNPDSLIAPLLCVSLDN 71


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +2

Query: 521 EVFSYVHEINPKFILGPLLSFSLDSETQSQLGKLLNTIAV 640
           + + ++H IN  F+L  LLS SL +   SQ  KLL  +++
Sbjct: 878 KTYGHLHYIN--FVLEKLLSSSLLTYNSSQRDKLLYEVSL 915


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/78 (24%), Positives = 37/78 (47%)
 Frame = +2

Query: 155 REYFSRNSQCQLVMGSVPDPLPLNYYRVDIPNSNLTVEYHDVKTRGFDTIKIIEFYINSK 334
           REY+S++ + + + G  P P+ +   ++     +L  E H V   G  +IK   F+I+  
Sbjct: 97  REYYSKSDEIKNICGLPPGPMKVE--QIGHAIDHLVSETHTVDHLG-SSIKASFFHIDDV 153

Query: 335 TEKLVLAAEVQSLKLASP 388
             + + +  +Q     SP
Sbjct: 154 PLEWISSICMQVQSFFSP 171


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -2

Query: 451 FQCVTSYNWLFGFPIVFEN 395
           F  V ++ W++G P+ F++
Sbjct: 360 FHSVANFGWIYGMPLFFQS 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,479
Number of Sequences: 5004
Number of extensions: 53112
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)