Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a21f
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0287 - 2137425-2137581,2137981-2138117,2138246-2138515,213...    29   2.4  
06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    29   4.2  
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465...    27   9.7  

>11_01_0287 -
           2137425-2137581,2137981-2138117,2138246-2138515,
           2138591-2138716,2138790-2138932,2139032-2139117,
           2139574-2139752,2139941-2140210,2140282-2140380
          Length = 488

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = +2

Query: 47  VLGLIASAVAFGENLDPADDPKNIKRPCPNFD---LNCIREYFSRNSQCQLVMGSVPD-- 211
           V+ L+ SA       D + D  N+K    + D   +  +REY   ++   +V+ ++PD  
Sbjct: 9   VIKLLTSASLLKAFNDESQDHDNLKVEVHHKDAVVIGSLREYHLDHNMAAVVVENLPDLR 68

Query: 212 PLPLNYYRVDIPNSNLTVEYHDV 280
           P+P N  +  +P+S +     D+
Sbjct: 69  PVPFNNVQKFVPHSMVVALGRDI 91


>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
            6412568-6412695,6412855-6412971,6414936-6415475,
            6415554-6417344,6418359-6421407,6421765-6421823,
            6422738-6422791
          Length = 1978

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 554  KFILGPLLSFSLDSETQSQLGKLLNTIAV 640
            K  + PL  + LD +TQSQ G+LL  +A+
Sbjct: 1740 KNAIAPLSMYLLDPQTQSQQGRLLAALAL 1768


>06_01_0641 -
           4652380-4653771,4653850-4654521,4654536-4654707,
           4655515-4655690
          Length = 803

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
 Frame = +2

Query: 89  LDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVMGSVPDPLPLNYYRVDIPNSNLTVE 268
           L  AD P + +   P+F L    +     S+C +  GS  DP       V I   ++ ++
Sbjct: 67  LQAADGPAH-EGSLPHFPLLLHAQRRKWRSRCSIKCGSHTDPSIFALAGVCIQCKDVLLD 125

Query: 269 YHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQS---LKLASPKTIFK 403
            HDV         I EF   +  EKLV+ A  +     K   P TI K
Sbjct: 126 DHDVAK------SITEFCAVAAIEKLVVGATARGGFRFKADIPTTISK 167


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,629,334
Number of Sequences: 37544
Number of extensions: 304608
Number of successful extensions: 722
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)