Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a21f
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11) 30 1.9
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 29 3.2
SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9) 29 4.3
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 9.9
SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15) 27 9.9
SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23) 27 9.9
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +2
Query: 371 LKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFT--AVFPSISDLQLSNAEVFSYV-H 541
+ LA P FK K+ V ++ YG + FT A+ P L+ NAE V
Sbjct: 326 IPLAYPGQYFKVLMKSSSAHVVKSLIKSTYGYVVFTAGAILPVEGPLKSVNAECLLMVEQ 385
Query: 542 EINPKF 559
E+NP F
Sbjct: 386 EVNPDF 391
>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
Length = 502
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 257 LTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASPK 391
+T + V ++ + EF+ SK EK++LA + +LKL PK
Sbjct: 11 ITTNFLSVFSKTHEVEWSTEFFQRSKNEKVLLALQEDTLKLKCPK 55
>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1055
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -3
Query: 522 SALLNCRSLMLGNTAVNVRVP*STSNASLLTIGSLAFLLYLKIVFGEANFKDCTSAANTS 343
S LLN + VN SN TI L FLL+ + +NF DC+ A+ +
Sbjct: 665 STLLNPSVTTFASPKVNFFTDVLLSNIVFFTICVLCFLLFNPVSLIFSNFMDCSQLADNN 724
>SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 353 AAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVD 457
A E K+A+ K + +YNRKAKE + R E +
Sbjct: 21 AKEKDPRKVAAGKKLAEYNRKAKEALAREMKREAE 55
>SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)
Length = 251
Score = 28.7 bits (61), Expect = 4.3
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Frame = +2
Query: 236 VDIPNSNLTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASP--------- 388
VDI ++ T+ + R D K++E Y N K V+ ++ L SP
Sbjct: 79 VDIDCASSTLCLSGGQMRVKDIEKVLEAYKNKGQLKHVI---LEDNPLVSPPCEVVSEGV 135
Query: 389 KTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSISDLQL 511
K +F+Y RK +E + +Y T FT PS+ + +
Sbjct: 136 KAVFEYLRKRQERRDLFEGYNKEYDTFAFTTKIPSLLHISI 176
>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 986
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 50 LGLIASAVAFGENLDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVMGSVP 208
+G +A AVAF NLD AD+P+ P L C+ SR+ G P
Sbjct: 568 IGDLAYAVAF--NLDLADNPQYYDLPVLESALECLGHVTSRSHWSTHAKGKSP 618
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -3
Query: 585 LNDRRGPKMNFGLISWT*LKTSALLNCR--SLMLGNTAVNVRVP*STSNASLLTIGSLAF 412
+ DR+G +N+ I+W AL R S ML N + + S + S SL F
Sbjct: 55 VGDRKGSDLNYYAITWVEAMLYALNEIRHNSSMLQNYTLGFDIRDSCNKVSTALEASLDF 114
Query: 411 LL 406
LL
Sbjct: 115 LL 116
>SB_16817| Best HMM Match : zf-CCCH (HMM E-Value=0.15)
Length = 794
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 95 PADDPKNIKRPCPNFDLNCIREYFSR 172
PA DP ++ PC +D+N + E+F +
Sbjct: 557 PASDPTPVREPC--YDMNTMPEHFQQ 580
>SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)
Length = 571
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 104 DPKNIKRPCPNFDLNCIREYFSRNSQCQLVMGS 202
+ K +R FD E +S N QCQL+ GS
Sbjct: 203 EDKPDERQETQFDFELPGEKYSANDQCQLIFGS 235
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 347 VLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALE 451
+L VQ L SP+ + ++ +AKE I R A++
Sbjct: 169 ILLPAVQKALLRSPEVVLEWQLRAKEEIHRQQAIQ 203
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,419
Number of Sequences: 59808
Number of extensions: 355256
Number of successful extensions: 988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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