Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a21f
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical pr...    39   0.003
AC024785-6|AAF60605.2|  467|Caenorhabditis elegans C-type lectin...    29   2.8  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    28   4.9  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    28   4.9  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    28   4.9  
U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U80839-8|AAB37914.1|  238|Caenorhabditis elegans Hypothetical
           protein ZC204.10 protein.
          Length = 238

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
 Frame = -1

Query: 272 DILRLNYYS-VYLLC-SNLKVVDLVQIPLLIDIENFLRNIHECSSSRSSDRVF*CFLGHR 99
           D+  LN++S V LL  S ++V D + I  +  +E  + N+    SS SSD +  CFL ++
Sbjct: 159 DVPLLNFFSSVELLSVSEIRVSDFIIIQNVRSLELHVVNLDYILSSNSSDILLYCFLSNK 218

Query: 98  PDPSSLQKQQQKRSNPKLK 42
            D + L KQ  K S P+L+
Sbjct: 219 -DLNLLMKQWIKGSMPRLR 236


>AC024785-6|AAF60605.2|  467|Caenorhabditis elegans C-type lectin
           protein 74 protein.
          Length = 467

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 464 TLTFTAVFPSISDLQLSNAE--VFSYVHEINPKFILGPLLSFSLDSETQS 607
           ++T T   P  S+ Q+   +  +F+Y +++NP  ++  L   SLDS+  S
Sbjct: 155 SVTKTTTTPDSSNCQVGGPQTVLFAYSNDLNPFIVMDTLQRSSLDSQNVS 204


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/100 (24%), Positives = 47/100 (47%)
 Frame = +2

Query: 305 KIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAV 484
           +I E  ++SK  +   + E++  +L     I    RKA +        E++  TL+   +
Sbjct: 611 RIAELELSSKESENRSSEELEEQRLYYVSMIEDLERKASDEYAALRE-ELNQKTLSSNLL 669

Query: 485 FPSISDLQLSNAEVFSYVHEINPKFILGPLLSFSLDSETQ 604
              + +LQLSNA +     +++ K  L   L  S++ ++Q
Sbjct: 670 QVQVDELQLSNATIKKLNADLSTKAGLIRSLEDSIEKKSQ 709


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/100 (24%), Positives = 47/100 (47%)
 Frame = +2

Query: 305 KIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAV 484
           +I E  ++SK  +   + E++  +L     I    RKA +        E++  TL+   +
Sbjct: 611 RIAELELSSKESENRSSEELEEQRLYYVSMIEDLERKASDEYAALRE-ELNQKTLSSNLL 669

Query: 485 FPSISDLQLSNAEVFSYVHEINPKFILGPLLSFSLDSETQ 604
              + +LQLSNA +     +++ K  L   L  S++ ++Q
Sbjct: 670 QVQVDELQLSNATIKKLNADLSTKAGLIRSLEDSIEKKSQ 709


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/100 (24%), Positives = 47/100 (47%)
 Frame = +2

Query: 305 KIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAV 484
           +I E  ++SK  +   + E++  +L     I    RKA +        E++  TL+   +
Sbjct: 609 RIAELELSSKESENRSSEELEEQRLYYVSMIEDLERKASDEYAALRE-ELNQKTLSSNLL 667

Query: 485 FPSISDLQLSNAEVFSYVHEINPKFILGPLLSFSLDSETQ 604
              + +LQLSNA +     +++ K  L   L  S++ ++Q
Sbjct: 668 QVQVDELQLSNATIKKLNADLSTKAGLIRSLEDSIEKKSQ 707


>U53332-4|ABS83852.1|  215|Caenorhabditis elegans Hypothetical
           protein F59G1.8a protein.
          Length = 215

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 377 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSISDLQL 511
           L + K +   NR+    I+ SDA E  + T+  +++FP +  LQL
Sbjct: 168 LKTAKILKARNRRQLSSIILSDAHETKFSTIAHSSLFP-LLHLQL 211


>U53332-3|ABS83853.1|  218|Caenorhabditis elegans Hypothetical
           protein F59G1.8b protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 377 LASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVFPSISDLQL 511
           L + K +   NR+    I+ SDA E  + T+  +++FP +  LQL
Sbjct: 171 LKTAKILKARNRRQLSSIILSDAHETKFSTIAHSSLFP-LLHLQL 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,565
Number of Sequences: 27780
Number of extensions: 290570
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)