Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a19r
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 33 0.24
U00063-5|AAK18963.1| 182|Caenorhabditis elegans Hypothetical pr... 30 1.7
U41016-8|ABC71806.1| 212|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z68213-1|CAA92435.2| 487|Caenorhabditis elegans Hypothetical pr... 29 5.1
L10990-4|ABB88238.1| 438|Caenorhabditis elegans Hypothetical pr... 29 5.1
L10990-3|ABB88237.1| 505|Caenorhabditis elegans Hypothetical pr... 29 5.1
AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81099-2|CAB03188.2| 297|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical p... 28 8.9
Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical p... 28 8.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.9
AF024500-4|AAB70365.1| 335|Caenorhabditis elegans Hypothetical ... 28 8.9
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 33.1 bits (72), Expect = 0.24
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -3
Query: 283 EPTPK-ESEPFKSVVPDNKPFGYPFDRPV-LPQYFKQPNMFFKKVLVYHEGELFPYLFNI 110
+PTPK +SEPF +P +KP PF P+ P+ +P K + H+ + FP
Sbjct: 7 KPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKP-KPKPMPKHKPKPFPKPMLF 65
Query: 109 PHYTP 95
P P
Sbjct: 66 PKPMP 70
Score = 31.5 bits (68), Expect = 0.72
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = -3
Query: 298 FVYPYEPTPKESEPFKSVVPDNKPFGYPFDRP-VLPQYFKQP---NMFFKKVLVYHEGEL 131
F P + +SEPF S +P KP P +P +P++ +P M F K + H+ +
Sbjct: 17 FPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKP 76
Query: 130 FPYLFNIPHYTP 95
FP P P
Sbjct: 77 FPKPMLFPKPMP 88
>U00063-5|AAK18963.1| 182|Caenorhabditis elegans Hypothetical
protein F56C9.8 protein.
Length = 182
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -3
Query: 292 YPYEPTPKESEPFKSVV--PDNKPFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYL 119
+PY P P ++ + + + P N P P + QY QP + LV + +
Sbjct: 82 FPYNPAPTQNYDYNAPIRTPVNPTSFTPV--PSVTQYSTQPQQYSNVPLVTPTTQQYIQN 139
Query: 118 FNIPHYTPD 92
+IP Y PD
Sbjct: 140 QSIPQYAPD 148
>U41016-8|ABC71806.1| 212|Caenorhabditis elegans Hypothetical
protein R11G1.2 protein.
Length = 212
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 349 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQ-YFKQPN 173
L++ Y G + Y T +S+ F VP KP GY D P+ P+ Y
Sbjct: 91 LLMDSDEYCGLSIENVYTRYITSETIDQSDTFGYNVP--KPIGYKGDEPIWPRSYGYSAE 148
Query: 172 MFF 164
MFF
Sbjct: 149 MFF 151
>Z68213-1|CAA92435.2| 487|Caenorhabditis elegans Hypothetical
protein C01F6.2 protein.
Length = 487
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 277 TPKESEPFKSVVPDNKPFGYPFDRPVLPQ 191
TPK + + VP N+P F RPV+P+
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPK 156
>L10990-4|ABB88238.1| 438|Caenorhabditis elegans Hypothetical
protein C30A5.10b protein.
Length = 438
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 795 SDVKSTKWSHSXTISTSMPSTLST---SVKKNSRALLTVTRS 679
S ST + + T +T+MP T T SVKKN+ L T ++S
Sbjct: 87 STFPSTTTASTTTSTTTMPPTYQTTTKSVKKNTETLWTTSKS 128
>L10990-3|ABB88237.1| 505|Caenorhabditis elegans Hypothetical
protein C30A5.10a protein.
Length = 505
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 795 SDVKSTKWSHSXTISTSMPSTLST---SVKKNSRALLTVTRS 679
S ST + + T +T+MP T T SVKKN+ L T ++S
Sbjct: 87 STFPSTTTASTTTSTTTMPPTYQTTTKSVKKNTETLWTTSKS 128
>AL032621-5|CAA21492.2| 404|Caenorhabditis elegans Hypothetical
protein Y45F3A.8 protein.
Length = 404
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -1
Query: 786 KSTKWSHSXTISTSMPSTLSTSVKKNSRALLTVTRSVNHVLTTS 655
+S++ H+ T S ++PS+ +++V+K + L TR +TT+
Sbjct: 221 RSSESRHNETTSITLPSSFNSTVRKLTLKELMTTRDTMPKITTA 264
>Z81099-2|CAB03188.2| 297|Caenorhabditis elegans Hypothetical
protein K08F9.3 protein.
Length = 297
Score = 27.9 bits (59), Expect = 8.9
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 1/107 (0%)
Frame = -3
Query: 406 DQGKIPTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYP-YEPTPKESEPFKSVVPDNK 230
D I D+F+ D+ P +P Y+ F + P Y P P +P P
Sbjct: 8 DPDSISPDVFDPYDSTP---YVPDA-YNPDMFNPYNNTVPDYIPVPSRPDPQSIYFPT-- 61
Query: 229 PFGYPFDRPVLPQYFKQPNMFFKKVLVYHEGELFPYLFNIPHYTPDK 89
G RP Y K + VL++ G+LF ++ N+ TPD+
Sbjct: 62 VIGNANRRPFAGLYVKI--LLGCLVLLFFFGDLFYFILNVKVTTPDQ 106
>Z75714-11|CAB00063.2| 723|Caenorhabditis elegans Hypothetical
protein ZC434.6b protein.
Length = 723
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 153 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 25
W++ YS Y L ++ I+R+ + ++ SK I +YNS
Sbjct: 74 WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116
>Z75714-10|CAN99711.1| 721|Caenorhabditis elegans Hypothetical
protein ZC434.6a protein.
Length = 721
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 153 WSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNS 25
W++ YS Y L ++ I+R+ + ++ SK I +YNS
Sbjct: 74 WNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNS 116
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 6161 VELFFSQAEVFSGLELDLLMECSEYV 6186
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 6181 VELFFSQAEVFSGLELDLLMECSEYV 6206
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 4718 VELFFSQAEVFSGLELDLLMECSEYV 4743
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 4879 VELFFSQAEVFSGLELDLLMECSEYV 4904
Score = 27.9 bits (59), Expect = 8.9
Identities = 8/26 (30%), Positives = 18/26 (69%)
Frame = +2
Query: 704 LEFFFTEVDSVEGIEVEMVXECDHFV 781
+E FF++ + G+E++++ EC +V
Sbjct: 6181 VELFFSQAEVFSGLELDLLMECSEYV 6206
>AF024500-4|AAB70365.1| 335|Caenorhabditis elegans Hypothetical
protein K06H6.6 protein.
Length = 335
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 151 VYHEGELFPYLFNIPHYTPDK 89
VY G L PY + +PH+TP K
Sbjct: 302 VYRNGGLNPYDYYLPHWTPLK 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,620,288
Number of Sequences: 27780
Number of extensions: 348642
Number of successful extensions: 1069
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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