Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a18r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    31   0.18 
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   2.9  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   3.8  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.6  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   8.8  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    25   8.8  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.8  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.8  

>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
 Frame = +1

Query: 394 SFSIPGNTKPFLASSSYVISNKTSKPAFLATA*EAPAVNTVAVTFTPMALHRGIL---VS 564
           S+S+  ++   + S++Y+ ++K+   + ++T   +P   T + TF    L R  +    S
Sbjct: 386 SYSVVQSSLASIISNAYIATSKSGLNSGVSTLLASP---TSSSTFVTSLLRRSSIDGSAS 442

Query: 565 NNSFPIFRPLHSGSTTSPYAVKYLSTSYFSKIFTLLATKSTAP 693
           ++S  +  P  S STT     K  +T + +++FT      + P
Sbjct: 443 SSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTP 485


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 394 SFSIPGNTKPFLA-SSSYVI--SNKTSKPAFLATA*EAPAVNTVAVT 525
           SF IPGNTK FLA    Y++   N++   + LA   E    N  AVT
Sbjct: 234 SFGIPGNTKEFLAYRILYMLFTKNRSEMNSLLANLKEEDKTN-AAVT 279


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 555 PRLQQFFSDIQAPPFRIHDQSVRSQVFVHVVLLEDIHAPGH 677
           P L  F ++  AP FRI D+       +H    E IH+  H
Sbjct: 247 PILAYFLANAPAPIFRIFDRVALEATLLHYPDYERIHSDIH 287


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +1

Query: 511 TVAVTFTPMALHRGILVSNNSFPIFRPLHSGSTTSPYAVKYLSTSYFSKIFTLLATKSTA 690
           T A T  P         SNNSF   +P  + +TT+P A    + S F K      T +  
Sbjct: 129 TGAATTNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAAS--TGSLFGKPAATGTTSNAP 186

Query: 691 PNS 699
           P S
Sbjct: 187 PAS 189


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/27 (55%), Positives = 18/27 (66%)
 Frame = +1

Query: 394 SFSIPGNTKPFLASSSYVISNKTSKPA 474
           S S+P  T P L + S V+SNKTSK A
Sbjct: 440 SSSVP--TLPNLTNISRVLSNKTSKSA 464


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/95 (21%), Positives = 41/95 (43%)
 Frame = +1

Query: 358 SIMRAISLEDFVSFSIPGNTKPFLASSSYVISNKTSKPAFLATA*EAPAVNTVAVTFTPM 537
           ++ R++SL+D          +   + ++ V  + T+    L  A  +  V  VA    PM
Sbjct: 86  TVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPM 145

Query: 538 ALHRGILVSNNSFPIFRPLHSGSTTSPYAVKYLST 642
            L RGI ++ ++   F   +    T+   +  ++T
Sbjct: 146 DLRRGIQLAVDNVVEFLQANKRDITTSEEISQVAT 180


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 354  LINHESHQLGRFRVFFN 404
            L NH S+  GRF VF++
Sbjct: 1152 LFNHRSYMSGRFHVFYS 1168


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -2

Query: 710  VWSMLFGAVDLVARSVNIFE------KYDVDKYLTAYGLVVDPEWRGLNIGKELLE 561
            +W +  G+    +  ++I+E       +DV   L++Y + +DPE R L    ELL+
Sbjct: 973  IWQIHQGSASCASTFLSIYEMALKIKNWDVCTELSSYLVSLDPEKRLLKTALELLD 1028


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,276
Number of Sequences: 5004
Number of extensions: 57909
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)