Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a18r
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 548 EGSSSPTILFRYSGPSIQDPRPVRTQSSICPRRTSRR 658
           + S SP++L R S  SI+ P P++ QS   P  T RR
Sbjct: 130 DSSMSPSLLNRLSENSIRQPSPIQMQS--IPFMTERR 164


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 512 RWLS-LSPLWLCIEGSSSPTILFRYSGPSIQDPRPVRTQSSICPRRTSRRYSRSWPLN 682
           RW   +SPL+L +  S      FR +   + DP  V T S    RR    ++ +WPL+
Sbjct: 25  RWFCFISPLFLTLACSVG---FFRMTELRVDDPSYVFTPSDARWRREISVFNENWPLD 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,770,883
Number of Sequences: 27780
Number of extensions: 309402
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)