Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a18f
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 28 1.3
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 27 3.0
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 26 5.2
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 5.2
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 6.9
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 6.9
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.1
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 25 9.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 9.1
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 9.1
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 9.1
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 9.1
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 107 RRDGVTTLLRIQDLTEDLRGAALALMEKYFMSDEPPCKFIGIHNHPRAV 253
R+DG T + +Q L + A E Y + D + I ++N PRA+
Sbjct: 533 RKDGTITSI-VQSLMDPGSSPASKQTESYLLLDPKSARAITVNNDPRAM 580
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 568 PRLQQFFSDIQAPPFRIHDQSVRSQVFVHVVLLEDIHAPGH 446
P L F ++ AP FRI D+ +H E IH+ H
Sbjct: 247 PILAYFLANAPAPIFRIFDRVALEATLLHYPDYERIHSDIH 287
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 5.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1
Query: 142 RSNGGLAWRCVGANGEILHE 201
+SNGG W C +G+++ +
Sbjct: 270 KSNGGFVWACKNYDGDVMSD 289
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 5.2
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = -1
Query: 612 TVAVTFTPMALHRGILVSNNSFPIFRPLHSGSTTSPYAVKYLSTSYFSKIFTLLATKSTA 433
T A T P SNNSF +P + +TT+P A + S F K T +
Sbjct: 129 TGAATTNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAAS--TGSLFGKPAATGTTSNAP 186
Query: 432 PNS 424
P S
Sbjct: 187 PAS 189
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +2
Query: 413 VWSMLFGAVDLVARSVNIFE------KYDVDKYLTAYGLVVDPEWRGLNIGKELLE 562
+W + G+ + ++I+E +DV L++Y + +DPE R L ELL+
Sbjct: 973 IWQIHQGSASCASTFLSIYEMALKIKNWDVCTELSSYLVSLDPEKRLLKTALELLD 1028
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 6.9
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 89 WRRFTVRRDGVTTLLRIQDLTEDLRGAALALMEKYFMSDEPPCKFIGI 232
W+ F + + +++ LT ++ GA +AL+EK+ +S P K I I
Sbjct: 700 WKNFELVVVESSGEIQVFSLTIEIEGADIALVEKFQLS-SPIIKSISI 746
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 539 NIGKELLETRIPLCRAIGVKVT 604
NIGKE+L+ PL IG+ +T
Sbjct: 495 NIGKEILKVCNPLIVCIGLAIT 516
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 9.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 606 AVTFTPMALHRGILVSNNSFPIFRPLHSGSTTSPYAVKYLSTSYFS 469
A TF P HR L+ ++S PL SG +TS + S + S
Sbjct: 313 AETFDPRMTHRTTLIESSS----SPLRSGPSTSGLLDSFTSAFHTS 354
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 233 HNHPRAVAELKSLWSKSVKDNLSLVCVKDNDD 328
H P +K+L S+ D + +VC DN++
Sbjct: 10 HVFPNVNGSIKALAFNSISDKIYVVCGLDNEN 41
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 52 FLATNEHGLPSHLAQVHRQTRRGYHTPPHP 141
F A H LPSHL+Q + + + + P P
Sbjct: 268 FAAPQAHPLPSHLSQSNVPPQLSHSSVPSP 297
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 9.1
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 347 PPRSGHCHRC 318
PPR+ HCH C
Sbjct: 192 PPRASHCHLC 201
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 539 NIGKELLETRIPLCRAIGVKVTATVF 616
N GK L E R+PL A+G + A +F
Sbjct: 358 NGGKPLPEQRLPLMMAVGWLMPAGIF 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,848
Number of Sequences: 5004
Number of extensions: 57901
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -