Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a18f
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0151 - 1263237-1263406,1267405-1267646,1267681-1267781,126... 29 2.3
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722 29 3.1
01_01_1059 - 8356328-8356645,8357567-8357865,8358119-8358124,835... 29 3.1
07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331 29 4.1
05_03_0028 + 7480132-7480335,7481329-7481637 28 5.4
01_06_1506 + 37830468-37830600,37830703-37830920,37832078-378325... 28 5.4
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 23 6.0
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 28 7.1
03_03_0141 + 14779557-14779600,14779686-14779749,14779827-147798... 27 9.4
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 9.4
01_06_1071 - 34289609-34292941 27 9.4
>11_01_0151 -
1263237-1263406,1267405-1267646,1267681-1267781,
1268010-1268780
Length = 427
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 497 TAYGLVVDPEWRGLNIGKELLETRI 571
TA+ LV P W+G+ G EL++ RI
Sbjct: 41 TAFPLVSSPTWKGIEHGLELVKQRI 65
>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
Length = 1155
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +1
Query: 397 SVGRQGLVHAVWSRGFSGQEREYLREVRRGQILDCVRTGRGS*MEGPEYRKRIVGDEDPS 576
SV Q L+ A W+ + Q+ + E+R I+ ++ G E P R +I GD
Sbjct: 1084 SVIDQSLLDATWNSEGTAQKYHDIEEIRTECIVSILKVGILCSKEIPTDRMQI-GDALRE 1142
Query: 577 MQSHRGESDSHXI 615
+Q+ R D+H +
Sbjct: 1143 LQAIRDRFDTHQL 1155
>01_01_1059 -
8356328-8356645,8357567-8357865,8358119-8358124,
8358276-8358720,8359722-8360036
Length = 460
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = -2
Query: 512 PVRTQSSICPRRTSRRYSRSWPLNPRLQT 426
PVRT S I PR T R+S S PR Q+
Sbjct: 199 PVRTTSDIRPRHTDSRWSHSPRSAPRSQS 227
>07_01_1122 - 10359014-10359127,10359686-10359769,10360375-10361331
Length = 384
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Frame = +1
Query: 7 ALSSRDKRTNT-------PNDGFLATNEHGLPSHLAQVHRQTRRGYHTPPHP 141
A SSR R T PN G L+T+ P R+ R G PPHP
Sbjct: 51 ASSSRSSRARTAVRPEPSPNGGALSTHHAAQPRRQRSRPRRQRGGAGRPPHP 102
>05_03_0028 + 7480132-7480335,7481329-7481637
Length = 170
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 535 PEYRKRIVGDEDPSMQSHRGESDSHXIH 618
PE R R GDE P Q RG+SDS +H
Sbjct: 93 PERRVRAGGDECPRRQ--RGKSDSFFVH 118
>01_06_1506 +
37830468-37830600,37830703-37830920,37832078-37832529,
37832595-37833402,37834986-37835073,37835196-37835299,
37835402-37835483,37836670-37836923
Length = 712
Score = 28.3 bits (60), Expect = 5.4
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Frame = +2
Query: 11 LAAETNGQTL--LTMVFLRPTNMAYPAIWRRFTVRRDGVTTLLRI-QDLTEDLRGAALAL 181
L A +NG MVFL + + + RR+T G+TTL RI L + +A
Sbjct: 341 LPAASNGALFNATIMVFLPIYDRIFIPVARRYTKNPSGITTLQRIGVGLVLSIITMIVAA 400
Query: 182 MEKYFMSDEPPCKFIGIHNHPRAVAELKSLW 274
M + M + G+ + P AV + LW
Sbjct: 401 MVE--MRRLRIARDFGLVDKPEAVVPMSFLW 429
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 23.4 bits (48), Expect(2) = 6.0
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 220 IYRYSQPPSSCGGTEESLEQVG 285
+Y S PPS C G S + G
Sbjct: 738 LYDRSSPPSPCNGASRSTTRQG 759
Score = 23.0 bits (47), Expect(2) = 6.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 376 SRQGGSLSVGRQGLVHAVWSR 438
+RQGGS+S R L+ V+ R
Sbjct: 756 TRQGGSMSNARYELLREVYGR 776
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 306 TRDRLSLTDLLQRLFSSATARGWL*IPINLQGGSSLMKYFSISANAAP 163
T + + L Q S+TA G L + +NL GSS+ K +IS + P
Sbjct: 838 TLEEVFLNIAKQAELESSTAEGTL-VTLNLSSGSSIQKTLNISLISLP 884
>03_03_0141 +
14779557-14779600,14779686-14779749,14779827-14779860,
14780308-14780438,14780655-14780728,14780869-14780947,
14781054-14781143,14781401-14781474,14782317-14782404,
14782654-14782780,14782864-14782968,14783446-14783569,
14783651-14783702,14784150-14784255,14784770-14784831,
14784912-14784956,14785527-14785625,14785772-14785924
Length = 516
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +3
Query: 501 RTDWSWILNGGA*ISEKN-C-WRRGSL 575
R DWS ++ G ISEKN C W RG +
Sbjct: 372 RDDWSVVIGGEEKISEKNGCDWLRGEV 398
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 569 SSSPTILFRYSGPSIQDPRPVRTQSSIC---PRRTSRRYS 459
SS+P +L RY + DP + SS C PRR SR S
Sbjct: 423 SSTPRVL-RYLSSRVMDPLSLTVPSSSCLPKPRRKSRTLS 461
>01_06_1071 - 34289609-34292941
Length = 1110
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -1
Query: 336 GSLSSLSFTQTRDRLSLTDLLQRLFSSATARGWL 235
G L SLS T ++ + L D ++ + A+ RGWL
Sbjct: 34 GKLESLSSTLSQLQAFLDDAEEKQLTDASVRGWL 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,128,241
Number of Sequences: 37544
Number of extensions: 483608
Number of successful extensions: 1412
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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