Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a18f
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8)            31   0.59 
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)                    29   3.1  
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)           29   3.1  
SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09)                 28   5.5  
SB_40238| Best HMM Match : DUF1030 (HMM E-Value=4.7)                   28   5.5  
SB_40228| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_38117| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_34657| Best HMM Match : TMEM9 (HMM E-Value=2.9)                     27   9.6  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         27   9.6  
SB_17999| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_46935| Best HMM Match : Merozoite_SPAM (HMM E-Value=1.8)
          Length = 625

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 469 REVRRGQILDCVRTGRGS*MEGPEYRKRIVGDEDPSMQSHRGESDSHXIH 618
           R V  G++++CV   +     GP+  +R VGD + S+++ RG+S +   H
Sbjct: 450 RGVSVGKVINCVGNTQEKTEFGPQ-EERWVGDTEESLETKRGKSKNETSH 498


>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
          Length = 771

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 380 DKEEVFQSDDKVWSMLFGAVDLVARSVNIFEKYDVDKYLTAYGLVVDPEWRGL 538
           D   + + +D+        +DL+A  +N+  +  + K   +YG V + EWRG+
Sbjct: 423 DNASLLKGNDRFMGFSKDLLDLLAEKLNVKYEIRISKE-KSYGSVKNGEWRGI 474


>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
          Length = 969

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 292 QSVSSLREGQR*Q*PDRGGSECPDRGL*SRQGGSLSVGRQGLVHA-VWSRGFSGQER 459
           +S SS REG       +GGS+ P+RG  SR+    S GR+  + A  WS  F   +R
Sbjct: 113 KSGSSEREGSP---VTKGGSKSPNRGRSSRKTSLSSTGRKSDLRARYWSYLFDNLKR 166


>SB_23952| Best HMM Match : THUMP (HMM E-Value=2.4e-09)
          Length = 229

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +2

Query: 152 EDLRGAALALMEKYFMSDE-PPCKF 223
           ED++  AL+L E YF+ +   PCKF
Sbjct: 156 EDIKKTALSLFEDYFLVENIKPCKF 180


>SB_40238| Best HMM Match : DUF1030 (HMM E-Value=4.7)
          Length = 692

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 422 MLFGAVDLVARSVNIFEKYDVDKYLTAYGLVVDPEWR 532
           +L   +DLV   V  F  Y +++Y+T Y    D EWR
Sbjct: 56  LLLNKMDLVKELVQEFTHY-MEEYVTVYDADDDEEWR 91


>SB_40228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 380 DKEEVFQSDDKVWSMLF 430
           +KEE+F+ DDK W +L+
Sbjct: 174 EKEELFEIDDKTWLVLY 190


>SB_38117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/72 (27%), Positives = 28/72 (38%)
 Frame = +2

Query: 113 DGVTTLLRIQDLTEDLRGAALALMEKYFMSDEPPCKFIGIHNHPRAVAELKSLWSKSVKD 292
           +G   +LR+ +  +  RG A  L E +     PP    G H+  R   + K      V D
Sbjct: 67  NGPQNVLRLDNYDDACRGHAHELKEYFKNEFTPPHPLEGRHSEIRKPVKQKKRKRIIVGD 126

Query: 293 NLSLVCVKDNDD 328
              L    D DD
Sbjct: 127 GTELWVTDDEDD 138


>SB_34657| Best HMM Match : TMEM9 (HMM E-Value=2.9)
          Length = 404

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -3

Query: 439 HGSKQHGPDLVVRLKDFL----LVCFRDHGQDIHSHHG 338
           H SK HG +L +R  DF        F+ H Q IH+ +G
Sbjct: 20  HDSKMHGENLDIRYNDFFDNDKNFVFQGHEQLIHAVNG 57


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +2

Query: 458 VNIFEKYDVDKYLTAYGLVVDPEWRGLNIGKELLETRIPLCR-AIGVKVTATVFTAGAS 631
           V++ + Y+  + L+A G +  P     N+GK L  TRI L +     K  A +   G S
Sbjct: 549 VDLKQHYNKTELLSAIGNISYPNGIARNLGKGLNSTRIALAQYGRSTKQIAIILNGGKS 607


>SB_17999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 380 DKEEVFQSDDKVWSMLF 430
           +KEE+F+ DDK W +L+
Sbjct: 160 EKEELFEIDDKTWLVLY 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,840,972
Number of Sequences: 59808
Number of extensions: 486815
Number of successful extensions: 1303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)