Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a18f
(633 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81128-9|CAC42344.1| 239|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical p... 27 8.4
Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z48795-3|CAA88727.1| 414|Caenorhabditis elegans Hypothetical pr... 27 8.4
AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical ... 27 8.4
>Z78419-5|CAB01703.1| 313|Caenorhabditis elegans Hypothetical
protein F26A3.5 protein.
Length = 313
Score = 31.5 bits (68), Expect = 0.52
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -1
Query: 333 SLSSLSFTQTRDRLSLTDLLQRLFSSATARGWL*IPINLQGGSSLMKYFSISANA 169
+L +++ T ++ +L +L ++L SAT G+ +PIN S + YF + +A
Sbjct: 155 ALVNVNTTMPQEAKALEELSKKLVISATLTGYDSVPINTPSKSPQVLYFQVKTHA 209
>Z75546-3|CAA99891.1| 581|Caenorhabditis elegans Hypothetical
protein R05D11.4 protein.
Length = 581
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 575 EGSSSPTILFRYSGPSIQDPRPVRTQSSICPRRTSRR 465
+ S SP++L R S SI+ P P++ QS P T RR
Sbjct: 130 DSSMSPSLLNRLSENSIRQPSPIQMQS--IPFMTERR 164
>Z81128-9|CAC42344.1| 239|Caenorhabditis elegans Hypothetical
protein T23D8.9b protein.
Length = 239
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 31 TNTPNDGFLATNEHGLPSHLAQVHRQTRRGYHTPPHP 141
T P G H +P H+ Q+ + +H PHP
Sbjct: 4 TGEPQRGPAGPYHHPMPYHVDQIPTTSHPSWHQAPHP 40
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +1
Query: 31 TNTPNDGFLATNEHGLPSHLAQVHRQTRRGYHTPPHP 141
T P G H +P H+ Q+ + +H PHP
Sbjct: 4 TGEPQRGPAGPYHHPMPYHVDQIPTTSHPSWHQAPHP 40
>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
protein R09H10.5 protein.
Length = 1603
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 421 GPDLVVRLKDFLLVCFRDHGQDIHSHHGRVTVIVVLHAD*RQIVLNRLAPETLQ 260
GPD K+F + ++ HGQD H R+T++ L + I+ +A + +Q
Sbjct: 63 GPDF----KEFFVHDYKIHGQDTAVFHARLTLVSSLTVSRQDIIDQIVATDDVQ 112
>Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 415 DLVVRLKDFLLVCFRDHGQDIHSHHGRVTVIVVLHAD*RQIVLN 284
D + ++ DFLL + H QD+ + G TV +V D + + N
Sbjct: 406 DGMEKVADFLLSIYSTHAQDVAAAVGEETVKLVDRVDPKTVARN 449
>Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -3
Query: 415 DLVVRLKDFLLVCFRDHGQDIHSHHGRVTVIVVLHAD*RQIVLN 284
D + ++ DFLL + H QD+ + G TV +V D + + N
Sbjct: 406 DGMEKVADFLLSIYSTHAQDVAAAVGEETVKLVDRVDPKTVARN 449
>Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical
protein K07G5.6 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 427 QHGPDLVVRLKDFLLVCFRDHGQDIHSHHGRVTVIVVLH 311
+HGP V RL F V F D ++I SH + + + L+
Sbjct: 114 EHGPFKVSRLFQFDEVSFEDQLKEIKSHRSQHYIFMPLY 152
>Z48795-3|CAA88727.1| 414|Caenorhabditis elegans Hypothetical
protein R05H5.4 protein.
Length = 414
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 91 AQVHRQTRRGYHTPPHP 141
AQV R+TR GY PP P
Sbjct: 324 AQVKRKTRAGYRLPPPP 340
>AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical
protein K07G5.6 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 427 QHGPDLVVRLKDFLLVCFRDHGQDIHSHHGRVTVIVVLH 311
+HGP V RL F V F D ++I SH + + + L+
Sbjct: 114 EHGPFKVSRLFQFDEVSFEDQLKEIKSHRSQHYIFMPLY 152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,521,823
Number of Sequences: 27780
Number of extensions: 349887
Number of successful extensions: 1163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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