Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a18f
         (633 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    25   0.81 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.3  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   5.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.7  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.5  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   9.9  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
 Frame = +1

Query: 529 EGPEYRKRIVGDED--PSMQSHRGESDSHXIHC 621
           E PE  KR   D      M+ H GE   H  HC
Sbjct: 11  ECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHC 43


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 1   DSALSSRDKRTNTPNDGFLATNEHGL 78
           DS + + +K +  PN  F     HG+
Sbjct: 674 DSRIKTTEKLSTDPNTHFQVNQSHGI 699


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 338 SGHCHRCPSRRL 303
           + HC+RC SR++
Sbjct: 62  NNHCNRCTSRQI 73


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/41 (21%), Positives = 20/41 (48%)
 Frame = +2

Query: 92  RRFTVRRDGVTTLLRIQDLTEDLRGAALALMEKYFMSDEPP 214
           R FT+  DG+  ++ +  + E  +  A+   +   ++  PP
Sbjct: 355 RNFTMSEDGMIEVIPLSAIPEPSKNPAMGHWQMSCVACSPP 395


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 66  RTWPTQPSG 92
           RTWP +PSG
Sbjct: 282 RTWPFRPSG 290


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 509 VRTQSSICPRRTSRRYSRSWPLNP 438
           VR   + CP R  RRY  ++   P
Sbjct: 402 VRILCACCPGRVRRRYQPAFRCKP 425


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 523 RIHDQSVRSQVFVHVVLLEDIHAP 452
           R H+Q +   V VH V+L+ +  P
Sbjct: 284 RKHEQRLLRNVGVHTVVLDLLQVP 307


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 422 MLFGAVDLVARSVNIFE 472
           ++ G  +L ARSVNIF+
Sbjct: 13  IMCGVQNLRARSVNIFQ 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,740
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)