Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a17r
         (343 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     28   2.2  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    28   2.2  
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376...    27   5.1  
07_03_1249 - 25172651-25172893,25173001-25173355,25173435-251735...    26   6.7  
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295...    26   6.7  
11_06_0708 + 26475306-26478404                                         26   8.9  
05_06_0204 + 26354319-26356967                                         26   8.9  

>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = +3

Query: 129  NSCKAFTLFW-PDL--------ISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNN 281
            +S K FTL+  PDL        + L SVC +    LT  C+S   V+ L    ++  LNN
Sbjct: 1085 SSLKEFTLYHLPDLCVLEGLSSLQLHSVCLVDIPKLTAECVSKFRVQDLLHVSSSAVLNN 1144

Query: 282  V 284
            +
Sbjct: 1145 I 1145


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -1

Query: 268 KFVCFTHRERTMI-SEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLTKMI 92
           KFV  T  ER  + SEM+     ND+I      + KS +N +  +++ +K+  + L K++
Sbjct: 337 KFVAQTDIERRKLESEMKKNSEQNDSIHMARIEQQKSDKNVLKLVEKHKKEKEIALNKIL 396


>11_05_0097 -
           19036044-19036358,19036502-19036585,19036772-19037644,
           19038059-19038157
          Length = 456

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 162 DLISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQ 272
           DL  L+S CN++ ++  T C   +  RS+C K   L+
Sbjct: 209 DLQCLLSHCNVLEWLSLTQC--SLQHRSICQKLCRLR 243


>07_03_1249 -
           25172651-25172893,25173001-25173355,25173435-25173593,
           25173809-25174269,25175137-25175322,25175429-25175800
          Length = 591

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 244 ERTMISEMQLVVSINDTILHTLTNEIKSG 158
           +RT   +MQL + +N  ++H L  E+K G
Sbjct: 528 KRTSSYDMQLRLRLNCHVVHNLNQELKMG 556


>07_03_0950 + 22828787-22828982,22829091-22829164,22829512-22829570,
            22830148-22830487,22830623-22833376
          Length = 1140

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 88   DLLHSGNNEMVEDEYCSTDDDQPPISPK 5
            D   S  NE+V+DE    D D PPI P+
Sbjct: 1077 DAYASSKNELVDDE-SLLDMDDPPIPPE 1103


>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 179 QCMQYCIIYADD*LHFRYH 235
           QC  YCI+Y +D    RY+
Sbjct: 421 QCFLYCIVYPEDWTIHRYY 439


>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +3

Query: 120 SF*NSCKAFTLFWPDLISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNNVYFY 293
           S+ N C +    + ++ SL+   +I   M + + IS   V + CVK  NLQ    + Y
Sbjct: 404 SYTNVCNSLISIYSEIGSLIHAESIFKTMQSRDVISWTAVMAGCVK--NLQYERAFGY 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,106,517
Number of Sequences: 37544
Number of extensions: 134716
Number of successful extensions: 286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)