Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner11a17r
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical pr... 31 0.22
Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical pr... 31 0.22
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 29 0.66
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 29 0.66
U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z81557-11|CAB04531.2| 319|Caenorhabditis elegans Hypothetical p... 27 2.7
U50311-15|AAA92317.1| 281|Caenorhabditis elegans Hypothetical p... 26 6.1
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p... 26 8.1
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 26 8.1
>Z72514-9|CAA96680.3| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 283 TLFSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQN 152
TLF C C + R M + V+ N+T+ H + + S ++
Sbjct: 128 TLFECGSFCASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAES 171
>Z68001-3|CAO78709.1| 449|Caenorhabditis elegans Hypothetical
protein T10B10.8 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.22
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 283 TLFSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQN 152
TLF C C + R M + V+ N+T+ H + + S ++
Sbjct: 128 TLFECGSFCASFRHSDMFNSGVFVLKTNETVFHDMEQHVASAES 171
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -1
Query: 277 FSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQNNV----NALQEFQKDVNL 110
F +F+ H +R+ + E ++ ++I + ++K Q ++ N LQE ++ NL
Sbjct: 3122 FIKQFMSLFHEKRSDLEEEKIHLNIGLNKISETEEQVKELQKSLKLKSNELQEKKEAANL 3181
Query: 109 LLTKMIGD 86
L +M+GD
Sbjct: 3182 KLKEMLGD 3189
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = -1
Query: 277 FSCKFVCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQNNV----NALQEFQKDVNL 110
F +F+ H +R+ + E ++ ++I + ++K Q ++ N LQE ++ NL
Sbjct: 3122 FIKQFMSLFHEKRSDLEEEKIHLNIGLNKISETEEQVKELQKSLKLKSNELQEKKEAANL 3181
Query: 109 LLTKMIGD 86
L +M+GD
Sbjct: 3182 KLKEMLGD 3189
>U88310-3|AAB42337.1| 608|Caenorhabditis elegans Hypothetical
protein C24G7.1 protein.
Length = 608
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -1
Query: 220 QLVVSINDTILHTLTNEI-KSGQ---NNVNALQEFQKDVNLLLTKMIGDLLHSGNNEMVE 53
Q+ + I T NE+ K+GQ N +N + + +V +L+ LLH GN ++ E
Sbjct: 135 QITICNFTPIRKTFVNEMNKTGQISPNMINYIMHWFTEVPILIGSSNWQLLHEGNKDLQE 194
>Z81557-11|CAB04531.2| 319|Caenorhabditis elegans Hypothetical
protein F59A1.7 protein.
Length = 319
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Frame = -1
Query: 262 VCFTHRERTMISEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLT--KMIG 89
V F HRE+ ++ L +++ND + + N +AL E V +++ K +
Sbjct: 96 VQFNHREKRCFTKNALKIALNDVTVLIENPHFQLSHFNFSALDEDTAAVETVMSWFKSVS 155
Query: 88 DLLHSGNNEMVEDEYCSTD 32
D E + E C+ D
Sbjct: 156 DSKKLWKVEKITLEACNCD 174
>U50311-15|AAA92317.1| 281|Caenorhabditis elegans Hypothetical
protein C25E10.12 protein.
Length = 281
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 156 WPDLISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNNVYFYLP 299
W + VC + M I + VR +C+ T+ +L+ + Y+P
Sbjct: 19 WKKYVKQGRVCEPIKPMRLDTPIFENKVRFVCISDTHEKLHEILPYIP 66
>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
protein F45G2.2a protein.
Length = 1235
Score = 25.8 bits (54), Expect = 8.1
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = -1
Query: 247 RERTMISEMQLVV-SINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLTKMIGDLLHSG 71
R+ +S+ ++ V +NDT +T+ G NV E +KD L K+ ++H G
Sbjct: 301 RDYKFVSQAEITVPGMNDTEEWQITD----GAFNVMGFSEREKDD---LYKLCSAIMHIG 353
Query: 70 NN---EMVEDEYCSTDDDQPPISPKK 2
N+ + DE DD P + K
Sbjct: 354 NSTFKQKPRDEQAEVDDMTSPTAACK 379
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 156 WPDLISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNL 269
W DL++L S + S+ +N + I SLC +QTN+
Sbjct: 318 WEDLMALTS--KLPSY---SNSLGTIYTHSLCERQTNM 350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,516,553
Number of Sequences: 27780
Number of extensions: 137921
Number of successful extensions: 335
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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