Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a17r
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.44 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.8  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    20   7.2  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    20   9.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    20   9.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.5  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            20   9.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    20   9.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.44
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 204 MLTTNCISDIMVRSLCVKQTNLQLNNVYFYLPT 302
           MLT   ++DI+ R++ +   NL +N     LPT
Sbjct: 23  MLTRGTVNDIVSRNITMVLENLLMNYENNQLPT 55


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 31  DDQPPISPK 5
           DDQPP+SP+
Sbjct: 438 DDQPPLSPQ 446


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 176 GQCMQYCIIYADD*LHFRYHGTLSMCETDK 265
           G  M+Y  + A +  H    G    CET K
Sbjct: 42  GLGMRYAFLGAFEAAHLNAEGMKKYCETYK 71


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 181 LTNEIKSGQNNVNALQE 131
           LT E+KS + +  ALQE
Sbjct: 228 LTTEVKSVEMHHEALQE 244


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 163 SGQNNVNALQEFQKDVNL 110
           S + N+N   EFQ++V L
Sbjct: 638 SMKENLNVYPEFQENVQL 655


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 231 IMVRSLCVKQTNLQLNNVYFYLPTPFHKY 317
           I+   L   + NL +NN Y     PF K+
Sbjct: 864 IVPEELVPLEGNLMINNKYALKFFPFDKH 892


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 178 SVYAILYHLC 207
           S+Y  +YHLC
Sbjct: 37  SIYWSMYHLC 46


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 181 LTNEIKSGQNNVNALQE 131
           LT E+KS + +  ALQE
Sbjct: 285 LTTEVKSVEMHHEALQE 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,169
Number of Sequences: 438
Number of extensions: 1518
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)