Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a17f
         (389 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   2.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   2.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   2.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   3.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   5.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   10.0 

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 277 NEMVEDEYCSTDDDQPPISPKKTRK*NLVQTNFE 378
           ++++E++  S +D     SP+ T+K N V    E
Sbjct: 158 DKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVE 191


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 277 NEMVEDEYCSTDDDQPPISPKKTRK*NLVQTNFE 378
           ++++E++  S +D     SP+ T+K N V    E
Sbjct: 106 DKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVE 139


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 277 NEMVEDEYCSTDDDQPPISPKKTRK*NLVQTNFE 378
           ++++E++  S +D     SP+ T+K N V    E
Sbjct: 289 DKLIEEDSRSNEDTSLHPSPRITKKANSVSVKVE 322


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 380  YSKLVCTKFYFLVFLGLIGGWSSSV-EQYS 294
            Y K+   K   +  L  IGGW+ S  ++YS
Sbjct: 1883 YEKVTAYKSKGIKVLVAIGGWNDSAGDKYS 1912



 Score = 20.2 bits (40), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -1

Query: 380  YSKLVCTKFYFLVFLGLIGGWSSSV-EQYS 294
            Y K+V  K   +  L  +GGW+ S   +YS
Sbjct: 2381 YKKVVSYKSRGVKVLIALGGWNDSAGNKYS 2410


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 329 IGGWSSSVEQYS 294
           IGGW+   E YS
Sbjct: 102 IGGWNEGSETYS 113


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 7/40 (17%), Positives = 22/40 (55%)
 Frame = -1

Query: 179 LISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNNV 60
           L +++  C+++SF++     +  +  ++ +K     +NN+
Sbjct: 168 LPNVILACHMLSFLMVHQGETQFVAANVILKTRFKTINNI 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,232
Number of Sequences: 336
Number of extensions: 1683
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8225022
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)