Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a17f
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0443 - 21283680-21283940,21284044-21284118,21284620-212846...    29   1.3  
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266     29   1.3  
05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     28   3.0  
02_02_0520 + 11152718-11153600,11153736-11153917,11154160-111542...    28   3.0  
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376...    27   7.0  
11_04_0265 + 15541329-15541568,15541653-15541901,15542172-155423...    27   7.0  
07_03_1249 - 25172651-25172893,25173001-25173355,25173435-251735...    26   9.2  
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295...    26   9.2  
05_04_0011 + 17139322-17139451,17139552-17140174                       26   9.2  

>05_04_0443 -
           21283680-21283940,21284044-21284118,21284620-21284649,
           21286744-21287247
          Length = 289

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 356 FYFLVFLGLIGGWSSSVEQ 300
           F+F+VFLGL   WS+SV++
Sbjct: 150 FFFIVFLGLTLSWSASVKK 168


>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
          Length = 272

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 356 FYFLVFLGLIGGWSSSVEQ 300
           F+F+VFLGL   WS+SV++
Sbjct: 143 FFFIVFLGLTLSWSASVKK 161


>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
 Frame = -1

Query: 215  NSCKAFTLFW-PDL--------ISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQLNN 63
            +S K FTL+  PDL        + L SVC +    LT  C+S   V+ L    ++  LNN
Sbjct: 1085 SSLKEFTLYHLPDLCVLEGLSSLQLHSVCLVDIPKLTAECVSKFRVQDLLHVSSSAVLNN 1144

Query: 62   V 60
            +
Sbjct: 1145 I 1145


>02_02_0520 +
           11152718-11153600,11153736-11153917,11154160-11154249,
           11154343-11154627,11154776-11154994,11155112-11155339
          Length = 628

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 76  KFVCFTHRERTMI-SEMQLVVSINDTILHTLTNEIKSGQNNVNALQEFQKDVNLLLTKMI 252
           KFV  T  ER  + SEM+     ND+I      + KS +N +  +++ +K+  + L K++
Sbjct: 337 KFVAQTDIERRKLESEMKKNSEQNDSIHMARIEQQKSDKNVLKLVEKHKKEKEIALNKIL 396


>11_05_0097 -
           19036044-19036358,19036502-19036585,19036772-19037644,
           19038059-19038157
          Length = 456

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 182 DLISLVSVCNIVSFMLTTNCISDIMVRSLCVKQTNLQ 72
           DL  L+S CN++ ++  T C   +  RS+C K   L+
Sbjct: 209 DLQCLLSHCNVLEWLSLTQC--SLQHRSICQKLCRLR 243


>11_04_0265 +
           15541329-15541568,15541653-15541901,15542172-15542321,
           15542427-15542901,15543132-15543445,15543875-15543973,
           15544567-15544659,15544737-15544922
          Length = 601

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 292 DEYCSTDDDQPPISPKKTRK*N 357
           DEY S  D  P +SPK+ +K N
Sbjct: 45  DEYSSPSDPCPTLSPKRRKKGN 66


>07_03_1249 -
           25172651-25172893,25173001-25173355,25173435-25173593,
           25173809-25174269,25175137-25175322,25175429-25175800
          Length = 591

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 100 ERTMISEMQLVVSINDTILHTLTNEIKSG 186
           +RT   +MQL + +N  ++H L  E+K G
Sbjct: 528 KRTSSYDMQLRLRLNCHVVHNLNQELKMG 556


>07_03_0950 + 22828787-22828982,22829091-22829164,22829512-22829570,
            22830148-22830487,22830623-22833376
          Length = 1140

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 256  DLLHSGNNEMVEDEYCSTDDDQPPISPK 339
            D   S  NE+V+DE    D D PPI P+
Sbjct: 1077 DAYASSKNELVDDE-SLLDMDDPPIPPE 1103


>05_04_0011 + 17139322-17139451,17139552-17140174
          Length = 250

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 389 FFXYSKLVCTKFYFLVFLGLIGGWSSS 309
           +F  + L+C  F F+V   ++GG SSS
Sbjct: 6   YFLVAMLLCNGFGFIVSAQVVGGGSSS 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,799,600
Number of Sequences: 37544
Number of extensions: 149425
Number of successful extensions: 326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)