Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a17f
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.54 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   2.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   3.8  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    20   8.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 140 MLTTNCISDIMVRSLCVKQTNLQLNNVYFYLPT 42
           MLT   ++DI+ R++ +   NL +N     LPT
Sbjct: 23  MLTRGTVNDIVSRNITMVLENLLMNYENNQLPT 55


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 313 DDQPPISPK 339
           DDQPP+SP+
Sbjct: 438 DDQPPLSPQ 446


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 353 YFLVFLGLIGGWSSSVEQ 300
           Y  + +G++GG  S VEQ
Sbjct: 407 YLFLAVGIVGGACSDVEQ 424


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 307 TDDDQPPISPKKTRK 351
           T++  PP+ PK+ RK
Sbjct: 633 TEERLPPLPPKRIRK 647


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -3

Query: 168 GQCMQYCIIYADD*LHFRYHGTLSMCETDK 79
           G  M+Y  + A +  H    G    CET K
Sbjct: 42  GLGMRYAFLGAFEAAHLNAEGMKKYCETYK 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,896
Number of Sequences: 438
Number of extensions: 1740
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)