Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a16r
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    29   0.45 
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    27   3.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.1  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   4.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   5.5  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.3  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   9.6  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   9.6  

>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = -3

Query: 483 ENHXNATHRYSCAQCKKVLPSPHFLDXHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNN 304
           +NH    H  SC+ C +   +   L  H+  +  +      E++ +Y C +E CK+ F  
Sbjct: 195 QNHIREAHVPSCSICGRQFKTAAHLRHHVVLHQTTL-----EERKTYHCPMEGCKKSFTR 249

Query: 303 TA 298
           ++
Sbjct: 250 SS 251


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = -3

Query: 576 DVDDGNYNTQFKQTPCS---XPGCKHIADTL 493
           DV D  Y ++ + TPCS    PGC    D L
Sbjct: 377 DVMDSQYGSKIEDTPCSLHNVPGCFSCFDRL 407


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 2   MPSFSFMRGLFISVNYLSNPSIEQSIFVSSLDFLSLVNFF 121
           M  F      +I +N+  N +++Q + +  L   SL N F
Sbjct: 1   MKMFQSFFSNYIDINFFRNATLDQCLLLFYLSLFSLTNLF 40


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 324 ILLCSSNTKVSFRPSQQNTNRGSPVCAGLRNAAKAEPSCI--ERTSTCASR 470
           I  C+  +  +     ++ N GS  C+   ++   +PSC   E+ S C+S+
Sbjct: 201 ICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSK 251


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 7   IIFFYERIIHFGKLSFKSVHRTVHICFIPRFLVAC 111
           I FF   ++ F  ++ +S+H  +  CF   FL AC
Sbjct: 289 ICFFALFVVRFFAITIQSIHLGLWFCFF--FLTAC 321


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = -3

Query: 459 RYSC--AQCKKVLPSPHFLDXHIQENHDSYFAVMAEKKPSYCCY 334
           +Y C    C K+   P F+  HI + H  +   +  KK + C Y
Sbjct: 473 KYRCHVGTCAKLFLGPEFVRKHINKKHKDWLDHI--KKVAICLY 514


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
 Frame = -3

Query: 531 CSXPGCKHIADTLLDXENHXNATHR----YSCAQCKKVLPSPHFLDXHIQENHDSYFAVM 364
           C+ P C   + T  +       TH     +SC+ C +       L+ H+Q+ H     + 
Sbjct: 28  CTYPDCPK-SFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMHLQKQNLS 86

Query: 363 AEKKPSYCCYIEEC 322
             +  +  C++  C
Sbjct: 87  ERRMLNASCFLGFC 100


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 369 VMAEKKPSYCCYIEECKQKFNN 304
           +  + KP YC   E C++KF+N
Sbjct: 490 IRVDAKPGYC---ENCREKFDN 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,283
Number of Sequences: 5004
Number of extensions: 44443
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)