Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a16r
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12964-6|AAM29681.1|  329|Caenorhabditis elegans Hypothetical pr...    35   0.058
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U61949-4|AAB03150.2|  414|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    29   2.2  
U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp ass...    29   2.9  
Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical...    28   6.7  
AC024817-46|AAF59573.2|  289|Caenorhabditis elegans Hypothetical...    28   6.7  
AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical ...    27   8.9  

>U12964-6|AAM29681.1|  329|Caenorhabditis elegans Hypothetical
           protein F26F4.8 protein.
          Length = 329

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
 Frame = -3

Query: 534 PCSXPGCKHIADTLLDXENHXNATHRYS------CAQCKKV 430
           PC   GC  + +T+L+ ENH N  H  +      C  C +V
Sbjct: 107 PCRAEGCDQLVETMLEGENHANTAHHVNGTVSIKCKDCSEV 147


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 483 ENHXNATHRYSCAQCKKVLPSPHFLDXHIQENHDSYFAVMAEKKPSYCCYIEECKQKFN 307
           EN      ++ C  CK+   S   +  H  E H    A   EK+  Y C I  C++ FN
Sbjct: 441 ENLHFTGSKFQCTMCKETDTSEQRMKDHYFETH-LVIAKSEEKESKYPCAI--CEEDFN 496


>U61949-4|AAB03150.2|  414|Caenorhabditis elegans Hypothetical
           protein F49E8.2 protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -3

Query: 579 YDVDDG-NYNTQF-KQTPCSXPGCKHIADTLLDXEN-HXNATHRYSCAQCKKVLPSPHFL 409
           ++V+ G N NT+  KQT       +H+ D   + E  + +   RY C  C + LP     
Sbjct: 211 HEVETGRNRNTKIRKQT-------EHVLDAHPESEFLNVDIAKRYECVHCLRTLPVSKSP 263

Query: 408 DXHIQENHD 382
             HI E+HD
Sbjct: 264 CEHISEHHD 272


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -3

Query: 483 ENHXNATHRYSCAQCKKVLPSPHFLDXHIQENHDSYFAVMAEKKPSYCCYIEECKQKFN 307
           EN      ++ C  CK+   S   +  H  E H    A   EK+  Y C I  C++ FN
Sbjct: 441 ENLHFTGSKFQCTMCKETDTSEQRMKDHYFETH-LVIAKSEEKESKYPCAI--CEEDFN 496


>U39997-9|AAA81101.2|  468|Caenorhabditis elegans Hypothetical
           protein F56D1.1 protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 480 NHXNATHRYSCAQCKKVLPSPHFLDXHIQENH 385
           +H  A+H+  C QC      P F+  H ++NH
Sbjct: 130 HHSKASHK--CPQCSYTNEKPAFIRRHFEQNH 159


>AC024791-14|AAF60658.1|  767|Caenorhabditis elegans P300/cbp
           associated factor homologprotein 1 protein.
          Length = 767

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 381 NRGSPVCAGLRNAAKAEPSCIERTSTCASRXNGFRNLT 494
           N G+  C G R     E   +ER +T A R N F  +T
Sbjct: 21  NAGTCQCRGFRPVLNHEDETVERRATRAERENDFAPMT 58


>Z79603-2|CAB01893.4|  500|Caenorhabditis elegans Hypothetical
           protein M163.2 protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
 Frame = -3

Query: 555 NTQFKQTPCSXPGCKHIADTLLDXENHXNATHR----YSC--AQCKKVLPSPHFLDXHIQ 394
           +T  K   C+ P C        D   H   TH     Y C    C      P  L  H++
Sbjct: 313 HTGEKPYHCNVPNCNKSFTNASDRSKHSKRTHSNEKPYCCDFGSCACAYTDPSSLRKHVK 372

Query: 393 ENHDSYFAV-MAEKK 352
             H  + A+ MA +K
Sbjct: 373 SKHPEHHAMKMAMRK 387


>U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical
           protein F53B3.1 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = -3

Query: 516 CKHIADTLLDXENHXNATHRYSCAQCKKVLPSPHFLDXHIQENHDSYFA 370
           C   A+     E H    H Y CA C +       +  H+ E H  Y A
Sbjct: 475 CDFRANRYTAMEEHKRDEHGYVCAICHERHAEYPEMKHHVYEEHGGYLA 523


>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -3

Query: 483 ENHXNATHRYSCAQCKKVLPSPHFLDXHIQENHD 382
           + H      Y CA C    PS   L  H+Q +HD
Sbjct: 229 KQHSRQLIMYGCALCATSYPSQLHLITHVQMSHD 262


>AL132902-14|CAE18021.2|  758|Caenorhabditis elegans Hypothetical
           protein Y71A12B.15 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -3

Query: 510 HIADTLLDXENHXNATHRYSCAQCKKVLPSPHFLDXHIQENHDSYFAVMAEKKP 349
           ++ D   D  ++   T RY  A C+KVLP   FLD       +  +  +A+  P
Sbjct: 237 NVLDVSRDWPDNYRQTIRYFLA-CEKVLPELKFLDCSSAYLDEDLYKELAQSHP 289


>AC024817-46|AAF59573.2|  289|Caenorhabditis elegans Hypothetical
           protein Y54G2A.24a protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 420 AKAEPSCIERTSTCASRXNGFRNLTXYQLC 509
           AKA+P C E    C  R N   N +   +C
Sbjct: 26  AKADPKCAEWMDDCIKRMNSLYNNSNINIC 55


>AF067942-9|AAG45572.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK6.2 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 44  NYLSNPSIEQSIFVSSLDFLSLVNFF 121
           N  SNPSIE+ I ++ +D++ + N F
Sbjct: 114 NNFSNPSIEEVIRMNKIDYVQISNNF 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,552,276
Number of Sequences: 27780
Number of extensions: 263881
Number of successful extensions: 762
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)