Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a15r
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0143 + 15174605-15174725,15175252-15175682                       32   0.40 
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015           31   0.70 
02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468     29   2.8  
01_01_0227 + 1933247-1933699                                           29   4.9  
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683...    28   6.5  
02_04_0590 - 24154366-24155742                                         28   6.5  
06_02_0225 + 13257655-13260693                                         28   8.6  
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    28   8.6  

>10_08_0143 + 15174605-15174725,15175252-15175682
          Length = 183

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -1

Query: 610 MNVKRFSPDEIKVTVK-NKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQE 452
           ++V  FS D +KV V+ +  + + G+    G  + +L  HF++RF LPPG+  +
Sbjct: 37  LDVTGFSKDHLKVQVEASGSLRISGERAVNGGGRHWL--HFLKRFDLPPGAADD 88


>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
          Length = 327

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 10/86 (11%)
 Frame = -1

Query: 643 IIANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKE--------AGD--IKKFLTNH 494
           ++ +D ++ +  ++   S +E+KV V++  + + G+HK+        +GD   K+   + 
Sbjct: 137 VMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSS 196

Query: 493 FVQRFVLPPGSKQEEVRAIYKENGIL 416
           +  R  LP    + +VRA  K NG+L
Sbjct: 197 YDMRLALPDECDKSKVRAELK-NGVL 221


>02_02_0571 - 11664292-11664809,11664900-11665750,11665837-11666468
          Length = 666

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 415 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 564
           L+YR L K   LLPV   +V++I    ++  T  C  +P   L    +C+
Sbjct: 588 LVYR-LIKLALLLPVTKASVEKIFSEVNAIHTDFCELIPDEILNDFMVCY 636


>01_01_0227 + 1933247-1933699
          Length = 150

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 547 VEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQEEVRAIYKENGILT 413
           V+GK+ E     +  +  F +RF LP G++ ++V A   +NG+LT
Sbjct: 87  VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSA-SMDNGVLT 130


>04_04_0664 -
           27066253-27067155,27067242-27067508,27067707-27068368,
           27068479-27069047,27070011-27070108
          Length = 832

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 116 WFHKGVVQSVSVDTLCDFIVSCRFSRGF----EFLLPDFASVRCRLSQI 250
           WF+  +  ++  D  C F  SC+ ++        L  DF S+R R+ ++
Sbjct: 126 WFYHQIPANLLADKECPFTFSCKIAKVIVEPPAALTADFLSIRSRMEEL 174


>02_04_0590 - 24154366-24155742
          Length = 458

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 545 DRDVFVFHCYFDLIRTESLHVHVHFKFVVIC 637
           DRD   F    DL+RT  LHV  H    V+C
Sbjct: 61  DRDPECFAVLLDLLRTGGLHVPPHVADGVLC 91


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 482 SLNEMIRQELLYVAGFLMLSFDRDVFVFHC 571
           ++N M+R   +   G  ML+FD D ++++C
Sbjct: 473 AMNAMVRASAILSNGPFMLNFDCDHYIYNC 502


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 415 LIYRFLCKSLALLPVCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICF 564
           L+Y+ L K + +LPV    V+R      + +T LC ++   +L    IC+
Sbjct: 733 LVYQLL-KLVLVLPVATATVERCFSAMKNVKTYLCNKIGDEYLSDSLICY 781


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,876
Number of Sequences: 37544
Number of extensions: 326765
Number of successful extensions: 810
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)