Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a15f
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       47   1e-05
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               47   1e-05
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 47   1e-05
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 47   1e-05
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   44   1e-04
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   43   2e-04
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 42   3e-04
SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)             31   1.0  
SB_928| Best HMM Match : Antistasin (HMM E-Value=10)                   28   5.4  
SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.1  
SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)                27   9.4  

>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 239 IANDDKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPG 415
           +AN++KLE+  ++V+ + P+EI   V+N ++ V+G+H   G    F    F + F LP G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPF-GFELKEFRRTFTLPEG 59

Query: 416 SKQEEVRAIYKENGIL 463
            +   V+     +G L
Sbjct: 60  VEASNVKTRISNHGQL 75



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +2

Query: 251 DKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQE 427
           D+LE+  ++V+ + P+EI   V+N ++ V+G+H   G    F    F + F LP G +  
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPF-GFELKEFRRTFTLPEGVEAS 297

Query: 428 EVRAIYKENGIL 463
            V+     +G L
Sbjct: 298 NVKTRISNHGQL 309



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +2

Query: 248 DDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLP 409
           DDK  + M+V  F PD IKV V    + V   H E      +   HF ++FVLP
Sbjct: 96  DDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH-EVEHEGHYHAMHFNRQFVLP 148



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +2

Query: 248 DDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLP 409
           DDK  + M+V  F PD IKV V    + V   H E      +   HF ++FVLP
Sbjct: 330 DDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH-EVEHEGHYHAMHFNRQFVLP 382


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 239 IANDDKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPG 415
           +AN++KLE+  ++V+ + P+EI   V+N ++ V+G+H   G    F    F + F LP G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPF-GFELKEFRRTFTLPEG 59

Query: 416 SKQEEVRAIYKENGIL 463
            +   V+     +G L
Sbjct: 60  VEASNVKTRISNHGQL 75



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +2

Query: 248 DDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLP 409
           DDK  + M+V  F PD IKV V    + V   H E      +   HF ++FVLP
Sbjct: 96  DDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH-EVEHEGHYHAMHFNRQFVLP 148


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 239 IANDDKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPG 415
           +AN++KLE+  ++V+ + P+EI   V+N ++ V+G+H   G    F    F + F LP G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPF-GFELKEFRRTFALPEG 59

Query: 416 SKQEEVRAIYKENGIL 463
            +   V+     +G L
Sbjct: 60  VEASNVKTRISNHGQL 75



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +2

Query: 248 DDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLP 409
           DDK  + M+V  F PD IKV V    + V   H E      +   HF ++FVLP
Sbjct: 96  DDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH-EVEHEGHYHAMHFNRQFVLP 148


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = +2

Query: 239 IANDDKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPG 415
           +AN++KLE+  ++V+ + P+EI   V+N ++ V+G+H   G    F    F + F LP G
Sbjct: 1   MANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPF-GFELKEFRRTFALPEG 59

Query: 416 SKQEEVRAIYKENGIL 463
            +   V+     +G L
Sbjct: 60  VEASNVKTRISNHGQL 75



 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = +2

Query: 248 DDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLP 409
           DDK  + M+V  F PD IKV V    + V   H E      +   HF ++FVLP
Sbjct: 96  DDKFSMAMDVTGFPPDSIKVQVLGNELLVSANH-EVEHEGHYHAMHFNRQFVLP 148


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +2

Query: 245 NDDKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSK 421
           N++KLE+  ++V+ + P+EI   V+N  + V+G+H   G    F    F + F LP G +
Sbjct: 4   NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPF-GFELKEFRRTFTLPEGVE 62

Query: 422 QEEVRAIYKENGIL 463
              V+     +G L
Sbjct: 63  ASNVKTRISNHGQL 76



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +2

Query: 242 ANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLP 409
           + DDK  + M+VK F P+ IKV V    + V   H E      +   HF ++F+LP
Sbjct: 94  SKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANH-EVEHEGHYHAMHFNRQFILP 148


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = +2

Query: 251 DKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPGSKQE 427
           DK+E+  ++VK + P+EI + V++  I ++GKHK  G+   + T+ F + + LP G    
Sbjct: 38  DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGE-HGYETSEFHRSYNLPDGVDVS 96

Query: 428 EVRAIYKENGIL 463
            V +    +G+L
Sbjct: 97  TVSSRITGDGLL 108


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +2

Query: 239 IANDDKLEV-NMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLPPG 415
           +A  + LE+  ++VK + P+EI   V+N  + V+G+H   G+   F    F + F LP G
Sbjct: 1   MAKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEF-GFELKEFRRTFTLPEG 59

Query: 416 SKQEEVRAIYKENGIL 463
              E V +    +G L
Sbjct: 60  IDPENVTSRISNHGHL 75



 Score = 34.3 bits (75), Expect = 0.082
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 242 ANDDKLEVNMNVKRFSPDEIKVTVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVLP 409
           A +DK  + ++V  F P+ IKV V    + V   H E      +   HF ++FVLP
Sbjct: 93  AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANH-EVEHEGHYHAMHFNRQFVLP 147


>SB_30630| Best HMM Match : Hydrolase (HMM E-Value=2.5e-05)
          Length = 839

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = -2

Query: 263 LQVCRHLRLFAALLSCLXXXXXXXXXXXGSTAINSDRQECLTHVCLVPRRDPRP 102
           LQVC++LRL++ + SC               A N    +C      VP   P P
Sbjct: 169 LQVCQNLRLYSQIGSCTGFTSEMVEILKEKAAANGYVPDCYVAADEVPEARPHP 222


>SB_928| Best HMM Match : Antistasin (HMM E-Value=10)
          Length = 334

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 49  LTSRCVTKCGLLPEQKTQGRGSLRGTRQTCVKHSCLS 159
           L SR V KCG    ++   RG  + T   CV HSC++
Sbjct: 46  LCSRTVNKCGC---RRRTCRGLHQVTSNACVTHSCVT 79


>SB_20166| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 378

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 308 TVKNKYITVEGKHKEAGDIKKFLTNHFVQRFVL 406
           T K  Y   E +H  +GD+K ++T+H  Q  VL
Sbjct: 326 TAKTSY--EENEHVVSGDVKDYMTSHSTQEGVL 356


>SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
          Length = 674

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 422 VCCRAVKRISERNDSSRTSLCRRLPYAFLRP*CICFSLLL 303
           +CC    R+  R     TS CR  PY  L+  C C+ ++L
Sbjct: 212 ICCSG--RVVPRRFGRNTSCCRYTPYNRLKQIC-CYPIVL 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,639,814
Number of Sequences: 59808
Number of extensions: 295086
Number of successful extensions: 830
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)