Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a15f
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -1

Query: 114 GSSTLCLLLWQEPTLSNAT 58
           G+   C+++W+ P++   T
Sbjct: 50  GNIITCIVIWRNPSMQTPT 68


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 368 SLCRRLPYAFLRP 330
           S CR +P  FLRP
Sbjct: 640 SACRDIPEEFLRP 652


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 348 LCFPSTVMYLFFTVT 304
           LC P  ++Y++FT +
Sbjct: 541 LCIPGYMIYIWFTTS 555


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 348 LCFPSTVMYLFFTVT 304
           LC P  ++Y++FT +
Sbjct: 594 LCIPGYMIYIWFTTS 608


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 313 HCYFDLIRTESLH 275
           HCYFD+  T   H
Sbjct: 246 HCYFDIEPTVQQH 258


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,443
Number of Sequences: 438
Number of extensions: 2507
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)