Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a12f
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)          23   8.8  

>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/108 (22%), Positives = 46/108 (42%)
 Frame = +2

Query: 122  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 301
            L   L N +  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 302  KDIVRDCFPVEFRLIFAENAIKLMYKRDGLALTLSNDVQGDDGRPAYG 445
            +  +  C P +  L   + A+ L   +D L      D   +   P  G
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQDLLMKIAQEDALQELTSPVSG 915


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 96  QIPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQM 227
           +IPTS     R SFTI    P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445


>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
          Length = 592

 Score = 23.4 bits (48), Expect(2) = 8.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 22  HRTRRSKDEARYSYSMSFRGISVCCRFR 105
           +RTR++ +  R +  M+  G+++ CR+R
Sbjct: 445 YRTRQTGESTRRTRKMTSSGVAI-CRYR 471



 Score = 22.6 bits (46), Expect(2) = 8.8
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +1

Query: 196 RGEEERSHHK----CREQTDTKQQDELHGVRLSTLAPGL 300
           RGE ER HH     CR +T   +Q    GVR     PG+
Sbjct: 478 RGERERRHHPGVAICRYRT---RQVSQRGVRERRNHPGV 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,389
Number of Sequences: 59808
Number of extensions: 372708
Number of successful extensions: 1150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)