Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a12f
         (669 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.              35   0.30 
BC107478-1|AAI07479.1|  416|Homo sapiens C6orf205 protein protein.     33   1.2  
BC105737-1|AAI05738.1|  566|Homo sapiens chromosome 6 open readi...    32   1.6  
BC105735-1|AAI05736.1|  566|Homo sapiens chromosome 6 open readi...    32   1.6  
AL669830-8|CAI18008.1|  566|Homo sapiens chromosome 6 open readi...    32   1.6  
AL663093-1|CAI17705.1|  566|Homo sapiens chromosome 6 open readi...    32   1.6  
AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four ...    31   4.9  

>AJ298317-1|CAC83674.1| 2448|Homo sapiens mucin 5 protein.
          Length = 2448

 Score = 34.7 bits (76), Expect = 0.30
 Identities = 45/186 (24%), Positives = 70/186 (37%)
 Frame = +3

Query: 102  PTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPI 281
            PT  T+ W+ S T    +  TT   + ++ Y       S+  + T    TT  T  S P 
Sbjct: 2240 PTQSTSSWQKSRTTTLVTTSTTSTPQTSTTYAHTTSTTSAPTARTTSAPTTSTT--SVPT 2297

Query: 282  NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTR 461
                  P+T+   V   S+  ++  + +S  T++T S+         T +     T RT 
Sbjct: 2298 TSTISGPKTTPSPVPTTSTTSAATTSTISAPTTSTTSVPGTTPSPVLTTSTTSAPTTRTT 2357

Query: 462  QARESAGS*SLCGXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTASIVSEPSGTC 641
             A   AG+ S  G           ++   T    +  T T     S  T+S  S P  T 
Sbjct: 2358 SA-SPAGTTSGPGNTPSPVPTTSTISAPTTSITSAPTTSTT----SAPTSSTTSGPGTTP 2412

Query: 642  SLLXTT 659
            S + TT
Sbjct: 2413 SPVPTT 2418


>BC107478-1|AAI07479.1|  416|Homo sapiens C6orf205 protein protein.
          Length = 416

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 46/177 (25%), Positives = 72/177 (40%)
 Frame = +3

Query: 108 SLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINF 287
           S TT   +S T  +S   TT      +  +      S   + TN   +T  +  ST  N 
Sbjct: 155 SSTTSSEAS-TATNSESSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNS 213

Query: 288 GSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQA 467
           GS    TSSG  +  +S+ S+  +  S  T++  S    +    AT ++  T ++    A
Sbjct: 214 GSST--TSSGTSTATNSESSTVSSGASTATTSESSTTS-SGASTATNSESSTVSSGASTA 270

Query: 468 RESAGS*SLCGXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTASIVSEPSGT 638
             S  S +  G            +VT+     +ALTG  T   S STA   ++P G+
Sbjct: 271 TNSESSTTSSGANTATNSGS---SVTSAGSGTAALTGMHTTSHSASTAVSEAKPGGS 324


>BC105737-1|AAI05738.1|  566|Homo sapiens chromosome 6 open reading
           frame 205 protein.
          Length = 566

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 42/167 (25%), Positives = 67/167 (40%)
 Frame = +3

Query: 138 TIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRTSSG 317
           T  +S   TT      +  +      S   + TN   +T  +  ST  N GS    TSSG
Sbjct: 314 TATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSST--TSSG 371

Query: 318 IVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESAGS*SLC 497
             +  +S+ S+  +  S  T++  S    +    AT ++  T ++    A  S  S +  
Sbjct: 372 TSTATNSESSTVSSGASTATTSESSTTS-SGASTATNSESSTVSSGASTATNSESSTTSS 430

Query: 498 GXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTASIVSEPSGT 638
           G            +VT+     +ALTG  T   S STA   ++P G+
Sbjct: 431 GANTATNSGS---SVTSAGSGTAALTGMHTTSHSASTAVSEAKPGGS 474


>BC105735-1|AAI05736.1|  566|Homo sapiens chromosome 6 open reading
           frame 205 protein.
          Length = 566

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 42/167 (25%), Positives = 67/167 (40%)
 Frame = +3

Query: 138 TIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRTSSG 317
           T  +S   TT      +  +      S   + TN   +T  +  ST  N GS    TSSG
Sbjct: 314 TATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSST--TSSG 371

Query: 318 IVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESAGS*SLC 497
             +  +S+ S+  +  S  T++  S    +    AT ++  T ++    A  S  S +  
Sbjct: 372 TSTATNSESSTVSSGASTATTSESSTTS-SGASTATNSESSTVSSGASTATNSESSTTSS 430

Query: 498 GXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTASIVSEPSGT 638
           G            +VT+     +ALTG  T   S STA   ++P G+
Sbjct: 431 GANTATNSGS---SVTSAGSGTAALTGMHTTSHSASTAVSEAKPGGS 474


>AL669830-8|CAI18008.1|  566|Homo sapiens chromosome 6 open reading
           frame 205 protein.
          Length = 566

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 42/167 (25%), Positives = 67/167 (40%)
 Frame = +3

Query: 138 TIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRTSSG 317
           T  +S   TT      +  +      S   + TN   +T  +  ST  N GS    TSSG
Sbjct: 314 TATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSST--TSSG 371

Query: 318 IVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESAGS*SLC 497
             +  +S+ S+  +  S  T++  S    +    AT ++  T ++    A  S  S +  
Sbjct: 372 TSTATNSESSTVSSGASTATTSESSTTS-SGASTATNSESSTVSSGASTATNSESSTTSS 430

Query: 498 GXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTASIVSEPSGT 638
           G            +VT+     +ALTG  T   S STA   ++P G+
Sbjct: 431 GANTATNSGS---SVTSAGSGTAALTGMHTTSHSASTAVSEAKPGGS 474


>AL663093-1|CAI17705.1|  566|Homo sapiens chromosome 6 open reading
           frame 205 protein.
          Length = 566

 Score = 32.3 bits (70), Expect = 1.6
 Identities = 42/167 (25%), Positives = 67/167 (40%)
 Frame = +3

Query: 138 TIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPINFGSRAPRTSSG 317
           T  +S   TT      +  +      S   + TN   +T  +  ST  N GS    TSSG
Sbjct: 314 TATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSST--TSSG 371

Query: 318 IVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQARESAGS*SLC 497
             +  +S+ S+  +  S  T++  S    +    AT ++  T ++    A  S  S +  
Sbjct: 372 TSTATNSESSTVSSGASTATTSESSTTS-SGASTATNSESSTVSSGASTATNSESSTTSS 430

Query: 498 GXXXXXXXXXXXLNVTNTWYWESALTGTATIWPSESTASIVSEPSGT 638
           G            +VT+     +ALTG  T   S STA   ++P G+
Sbjct: 431 GANTATNSGS---SVTSAGSGTAALTGMHTTSHSASTAVSEAKPGGS 474


>AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four and
           a half LIM domain protein 2 protein.
          Length = 151

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 267 WSTPINFGSRAPRTSSGIVSQLSSDLSSPKT-RLSLC 374
           WST    G R   +++   SQL   +SSPKT R+S+C
Sbjct: 57  WSTRAAAGMRPASSATAASSQLEPRVSSPKTIRISVC 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,448,901
Number of Sequences: 237096
Number of extensions: 1658335
Number of successful extensions: 4676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4674
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)