Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a09r
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5DKV7 Cluster: WbaY; n=2; Shigella boydii|Rep: WbaY - ...    33   6.8  
UniRef50_A4RX01 Cluster: Predicted protein; n=2; Ostreococcus|Re...    33   6.8  
UniRef50_Q23YT3 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  

>UniRef50_Q5DKV7 Cluster: WbaY; n=2; Shigella boydii|Rep: WbaY -
           Shigella boydii
          Length = 372

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -3

Query: 585 PLFVTSHVVFVCDQSYIGHVTRDKRFDGILFGRTCKSQ-IDVIFYKYFYKTTPNKVDSCA 409
           PLF+ S+V+      YI ++  +K++D I FGR C  + +D++      K   NK     
Sbjct: 171 PLFINSNVI----NGYIKNLNAEKKYDFIFFGRLCYYKGVDILLDA--VKILKNKGAEPE 224

Query: 408 TWVFGDLLLLNII 370
            ++ GD  L+N I
Sbjct: 225 IFMAGDGDLVNYI 237


>UniRef50_A4RX01 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
           Predicted protein - Ostreococcus lucimarinus CCE9901
          Length = 591

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -3

Query: 639 TRPKTLFNICVVGCR-SIPPLFVTSHVVFVCDQSYIGHVTRDKRFDGILFGRTCKSQIDV 463
           TR  T    C V  R S  P FVT+ + +V DQ +IGHV      D     R  + + DV
Sbjct: 46  TRATTRGRGCAVAARASEGPTFVTTPIYYVNDQPHIGHVYTSTVADAYARYRRARGE-DV 104

Query: 462 IF 457
            F
Sbjct: 105 FF 106


>UniRef50_Q23YT3 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 785

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -3

Query: 477 SQIDVIFYKYFYKTTPNKVDSCATWVFGDLLLLNIIMLNRYSVQI-VIIELFQIHVMYNL 301
           S  DVI   YFY     + DS  T++    +  +II+ N  +  I +++ +F ++++YNL
Sbjct: 208 SMYDVISQSYFYIQFITEYDSTNTYLLSKSIQHSIIIHNDQAFTITILVFMFVLNILYNL 267


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 650,909,006
Number of Sequences: 1657284
Number of extensions: 12621535
Number of successful extensions: 25708
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25704
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)