Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a09r
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   4.5  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    26   6.0  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   6.0  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/80 (21%), Positives = 37/80 (46%)
 Frame = +1

Query: 427 IRSRLIEILIKNYIYLAFTSSAKQNTVKTLVASHVTNVALVANKHHM*RHKEGGDRPAPN 606
           ++ +L+ I   NYI   F  S ++    +L+A+++    L  +   +        +P P 
Sbjct: 234 VQKQLLCIHRPNYIKQFF--SLQREIESSLIANYLRYTKLCESNTLLNGLTIRPQKPTPT 291

Query: 607 NTNIKQSLGSCSENVDLISY 666
           N  ++ +L + + N D + Y
Sbjct: 292 NCGLQHALDNINANTDFVQY 311


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 308 YITCI*NSSMITICTEYRFNIIIFNNN 388
           +I C+  SS I + TE  F  I FN++
Sbjct: 110 FIVCVSQSSRIKLITEEEFKQICFNSS 136


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 44  SMHFIGQNKIFKNHYIKNHNLSIQRFQK-RKRVA 142
           S+H +G  +  K H ++N  L IQR +  R+R+A
Sbjct: 93  SLHDVGDFEQCKRHLVENGKLFIQRARACRQRIA 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,577
Number of Sequences: 5004
Number of extensions: 56380
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)