Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner11a09r
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0006 - 14035990-14036135,14036246-14036339,14036845-140371...    28   6.2  
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234...    28   6.2  
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299...    28   8.3  

>10_08_0006 -
           14035990-14036135,14036246-14036339,14036845-14037176,
           14038040-14038094,14038682-14038750,14038940-14039039,
           14039212-14039255,14039705-14039873,14040262-14040333,
           14040439-14040519,14040586-14040650,14040796-14041260
          Length = 563

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 326 NSSMITICTEYRFNIIIF-NNNKSPN 400
           N SMI + T Y+FNI IF N N+ P+
Sbjct: 466 NGSMIEMATFYKFNIQIFLNMNEHPD 491


>04_04_0919 -
           29422003-29422267,29422411-29422660,29423163-29423481,
           29423625-29424794,29424879-29425388,29425449-29425607
          Length = 890

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 600 CRSIPPLFVTS--HVVFVCDQSYIGHVTRDKRFDGILFGRTCKSQIDVI 460
           C S+ PL V+   H V + D+  +    + K  DG L GR+   ++ ++
Sbjct: 583 CESLIPLQVSGLKHAVLIGDECQLPATVKSKAADGALLGRSLFERLTLL 631


>02_03_0161 +
           15828887-15828985,15829066-15829686,15829759-15829908,
           15829994-15830389,15830455-15830487,15830553-15830693,
           15830793-15830924,15830999-15831082,15831159-15831461,
           15831543-15831734,15831805-15831942,15832019-15832143,
           15832223-15832319
          Length = 836

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = -3

Query: 522 RDKRFDGILFGRTCKSQIDVIFYKYFYKTTPNKVDSCATWVFGDLLLLNIIMLNRYS 352
           R +R +G +   T KSQ D I+YK   KT P  V S       DL LL+ + L+  S
Sbjct: 560 RLRRPEGRIIKPTHKSQTDFIYYK---KTFPKPVKSSREPKPHDLSLLDEVTLSYIS 613


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,818
Number of Sequences: 37544
Number of extensions: 329922
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)